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Zinc in PDB 5lfy: Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H (pdb code 5lfy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H, PDB code: 5lfy:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lfy

Go back to Zinc Binding Sites List in 5lfy
Zinc binding site 1 out of 2 in the Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
OE1 A:GLU3 2.0 0.0 1.0
NE2 A:HIS7 2.0 0.0 1.0
O B:ASP1 2.0 0.0 1.0
NE2 B:HIS6 2.1 0.0 1.0
CD A:GLU3 2.3 0.0 1.0
OE2 A:GLU3 2.4 0.0 1.0
CD2 A:HIS7 2.9 0.0 1.0
HA B:ALA2 2.9 0.0 1.0
HD2 A:HIS7 3.0 0.0 1.0
CE1 B:HIS6 3.0 0.0 1.0
C B:ASP1 3.0 0.0 1.0
HE1 B:HIS6 3.1 0.0 1.0
CE1 A:HIS7 3.2 0.0 1.0
CD2 B:HIS6 3.2 0.0 1.0
HD2 B:HIS6 3.5 0.0 1.0
HE1 A:HIS7 3.5 0.0 1.0
CG A:GLU3 3.6 0.0 1.0
HA A:GLU3 3.6 0.0 1.0
HG3 A:GLU3 3.6 0.0 1.0
CA B:ALA2 3.7 0.0 1.0
N B:ALA2 3.7 0.0 1.0
H1 B:ASP1 3.7 0.0 1.0
HB2 A:HIS6 3.8 0.0 1.0
H2 B:ASP1 3.8 0.0 1.0
HB2 B:ASP1 4.0 0.0 1.0
CA B:ASP1 4.0 0.0 1.0
N B:ASP1 4.1 0.0 1.0
CG A:HIS7 4.1 0.0 1.0
C B:ALA2 4.1 0.0 1.0
ND1 B:HIS6 4.2 0.0 1.0
HD2 A:HIS6 4.2 0.0 1.0
ND1 A:HIS7 4.2 0.0 1.0
CG B:HIS6 4.3 0.0 1.0
HG2 A:GLU3 4.3 0.0 1.0
CB A:GLU3 4.4 0.0 1.0
CA A:GLU3 4.5 0.0 1.0
O B:ALA2 4.5 0.0 1.0
H B:ALA2 4.5 0.0 1.0
CB B:ASP1 4.6 0.0 1.0
HB3 A:HIS6 4.6 0.0 1.0
HB2 A:GLU3 4.6 0.0 1.0
CB A:HIS6 4.6 0.0 1.0
N B:GLU3 4.7 0.0 1.0
H B:GLU3 4.7 0.0 1.0
CD2 A:HIS6 4.8 0.0 1.0
O A:GLU3 4.9 0.0 1.0
HA B:ASP1 4.9 0.0 1.0
CB B:ALA2 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 5lfy

Go back to Zinc Binding Sites List in 5lfy
Zinc binding site 2 out of 2 in the Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Zinc Bound Dimer of the Fragment of Human Amyloid-Beta Peptide with Alzheimer'S Disease Pathogenic Taiwanese Mutation D7H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
OE1 B:GLU3 2.0 0.0 1.0
NE2 B:HIS7 2.0 0.0 1.0
O A:ASP1 2.0 0.0 1.0
NE2 A:HIS6 2.1 0.0 1.0
CD B:GLU3 2.1 0.0 1.0
OE2 B:GLU3 2.2 0.0 1.0
HA A:ALA2 2.7 0.0 1.0
CE1 A:HIS6 2.9 0.0 1.0
CD2 B:HIS7 3.0 0.0 1.0
C A:ASP1 3.0 0.0 1.0
HE1 A:HIS6 3.1 0.0 1.0
CE1 B:HIS7 3.1 0.0 1.0
HD2 B:HIS7 3.1 0.0 1.0
CD2 A:HIS6 3.2 0.0 1.0
CG B:GLU3 3.4 0.0 1.0
HE1 B:HIS7 3.4 0.0 1.0
HG3 B:GLU3 3.4 0.0 1.0
CA A:ALA2 3.5 0.0 1.0
HD2 A:HIS6 3.5 0.0 1.0
HA B:GLU3 3.5 0.0 1.0
N A:ALA2 3.6 0.0 1.0
HB2 A:ASP1 3.9 0.0 1.0
HB2 B:HIS6 4.0 0.0 1.0
H3 A:ASP1 4.0 0.0 1.0
C A:ALA2 4.0 0.0 1.0
CA A:ASP1 4.1 0.0 1.0
HG2 B:GLU3 4.1 0.0 1.0
ND1 A:HIS6 4.1 0.0 1.0
CG B:HIS7 4.2 0.0 1.0
ND1 B:HIS7 4.2 0.0 1.0
CB B:GLU3 4.2 0.0 1.0
CG A:HIS6 4.3 0.0 1.0
H1 A:ASP1 4.3 0.0 1.0
HB2 B:GLU3 4.3 0.0 1.0
CA B:GLU3 4.4 0.0 1.0
N A:ASP1 4.4 0.0 1.0
HD2 B:HIS6 4.4 0.0 1.0
O A:ALA2 4.5 0.0 1.0
CB A:ASP1 4.5 0.0 1.0
H A:ALA2 4.5 0.0 1.0
N A:GLU3 4.6 0.0 1.0
H A:GLU3 4.6 0.0 1.0
HB3 A:ASP1 4.7 0.0 1.0
CB A:ALA2 4.8 0.0 1.0
HB3 A:ALA2 4.8 0.0 1.0
HB3 B:HIS6 4.8 0.0 1.0
CB B:HIS6 4.8 0.0 1.0
O B:GLU3 4.8 0.0 1.0
HD1 A:HIS6 5.0 0.0 1.0

Reference:

V.I.Polshakov, A.B.Mantsyzov, S.A.Kozin, A.A.Adzhubei, S.S.Zhokhov, W.Van Beek, A.A.Kulikova, M.I.Indeykina, V.A.Mitkevich, A.A.Makarov. A Binuclear Zinc Interaction Fold Discovered in the Homodimer of Alzheimer'S Amyloid-Beta Fragment with Taiwanese Mutation D7H. Angew. Chem. Int. Ed. Engl. V. 56 11734 2017.
ISSN: ESSN 1521-3773
PubMed: 28570778
DOI: 10.1002/ANIE.201704615
Page generated: Sun Oct 27 20:59:31 2024

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