Atomistry » Zinc » PDB 5l0k-5lcf » 5l2l
Atomistry »
  Zinc »
    PDB 5l0k-5lcf »
      5l2l »

Zinc in PDB 5l2l: NAB2 Zn Fingers 5-7 Bound to A11G Rna

Protein crystallography data

The structure of NAB2 Zn Fingers 5-7 Bound to A11G Rna, PDB code: 5l2l was solved by M.Stewart, S.Aibara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.09 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.669, 85.035, 64.956, 90.00, 99.07, 90.00
R / Rfree (%) 13.1 / 15.2

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Zinc atom in the NAB2 Zn Fingers 5-7 Bound to A11G Rna (pdb code 5l2l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 14 binding sites of Zinc where determined in the NAB2 Zn Fingers 5-7 Bound to A11G Rna, PDB code: 5l2l:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 1 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:17.5
occ:1.00
NE2 A:HIS430 2.1 17.5 1.0
SG A:CYS415 2.3 18.4 1.0
SG A:CYS426 2.4 19.1 1.0
SG A:CYS421 2.4 18.0 1.0
HB2 A:CYS421 3.0 21.6 1.0
HB2 A:CYS415 3.0 20.9 1.0
CE1 A:HIS430 3.1 16.9 1.0
CD2 A:HIS430 3.1 19.0 1.0
CB A:CYS421 3.2 18.0 1.0
CB A:CYS426 3.2 19.8 1.0
CB A:CYS415 3.2 17.4 1.0
HE1 A:HIS430 3.3 20.2 1.0
HD2 A:HIS430 3.3 22.8 1.0
HB3 A:CYS426 3.3 23.8 1.0
HB2 A:CYS426 3.3 23.8 1.0
HB3 A:CYS421 3.4 21.6 1.0
HB3 A:CYS415 3.6 20.9 1.0
HB2 A:TYR428 4.0 23.7 1.0
O G:HOH127 4.0 42.0 1.0
H2 G:A3 4.1 29.9 1.0
HD2 A:PHE417 4.1 22.1 1.0
O A:HOH676 4.2 30.6 1.0
ND1 A:HIS430 4.2 18.6 1.0
CG A:HIS430 4.2 16.8 1.0
H61 C:A4 4.3 23.1 1.0
HB3 A:ASN423 4.3 26.1 1.0
HB2 A:PHE417 4.3 21.1 1.0
H A:TYR428 4.5 22.9 1.0
CA A:CYS415 4.6 15.1 1.0
HD2 A:TYR428 4.6 26.5 1.0
HA A:CYS415 4.6 18.1 1.0
CA A:CYS421 4.6 18.5 1.0
CA A:CYS426 4.7 20.6 1.0
C2 G:A3 4.7 24.9 1.0
H A:PHE417 4.7 20.5 1.0
HA A:CYS421 4.8 22.2 1.0
HA A:CYS426 4.9 24.7 1.0
HD1 A:HIS430 4.9 22.4 1.0
N6 C:A4 5.0 19.3 1.0
CB A:TYR428 5.0 19.7 1.0
H A:ASN423 5.0 23.8 1.0

Zinc binding site 2 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 2 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:17.6
occ:1.00
NE2 A:HIS452 2.1 17.2 1.0
SG A:CYS443 2.4 18.4 1.0
SG A:CYS448 2.4 17.5 1.0
SG A:CYS437 2.4 19.1 1.0
CE1 A:HIS452 3.0 17.0 1.0
HB2 A:CYS437 3.0 21.4 1.0
HB2 A:CYS443 3.1 23.5 1.0
CB A:CYS443 3.1 19.6 1.0
HB3 A:CYS443 3.1 23.5 1.0
HE1 A:HIS452 3.2 20.4 1.0
CD2 A:HIS452 3.2 18.3 1.0
HB3 A:CYS448 3.3 22.2 1.0
CB A:CYS437 3.3 17.8 1.0
CB A:CYS448 3.3 18.5 1.0
HD2 A:HIS452 3.4 22.0 1.0
HB2 A:CYS448 3.4 22.2 1.0
HB3 A:CYS437 3.6 21.4 1.0
HH12 A:ARG429 3.7 21.5 1.0
O D:HOH137 3.8 36.0 1.0
HB2 A:PHE450 3.8 22.0 1.0
H61 D:A11 4.2 24.2 1.0
ND1 A:HIS452 4.2 17.0 1.0
NH1 A:ARG429 4.2 17.9 1.0
CG A:HIS452 4.3 17.2 1.0
O A:HOH611 4.3 49.5 1.0
HH11 A:ARG429 4.4 21.5 1.0
HB3 A:ARG445 4.4 22.9 1.0
HB2 A:GLU439 4.5 30.3 1.0
H A:PHE450 4.5 19.8 1.0
CA A:CYS443 4.6 18.5 1.0
CA A:CYS437 4.7 17.7 1.0
HD2 A:PHE450 4.7 21.9 1.0
HA A:CYS437 4.7 21.2 1.0
CA A:CYS448 4.8 17.0 1.0
HH22 A:ARG429 4.8 23.9 1.0
CB A:PHE450 4.8 18.3 1.0
N6 D:A11 4.8 20.1 1.0
O A:PHE450 4.8 18.5 1.0
H62 D:A11 4.8 24.2 1.0
H A:ARG445 4.9 23.3 1.0
H A:GLU439 4.9 25.4 1.0
HA A:CYS443 4.9 22.2 1.0
CZ A:ARG429 4.9 17.9 1.0
HD1 A:HIS452 4.9 20.4 1.0

Zinc binding site 3 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 3 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:17.7
occ:1.00
NE2 A:HIS473 2.1 17.9 1.0
SG A:CYS464 2.4 17.7 1.0
SG A:CYS458 2.4 17.3 1.0
SG A:CYS469 2.4 18.3 1.0
CE1 A:HIS473 3.0 19.1 1.0
HB3 A:CYS469 3.1 22.5 1.0
CD2 A:HIS473 3.1 19.8 1.0
HB2 A:CYS464 3.2 20.9 1.0
HE1 A:HIS473 3.2 22.9 1.0
CB A:CYS469 3.2 18.7 1.0
CB A:CYS464 3.2 17.4 1.0
HB2 A:CYS458 3.2 22.1 1.0
HB3 A:CYS464 3.3 20.9 1.0
HD2 A:HIS473 3.3 23.8 1.0
HB2 A:CYS469 3.3 22.5 1.0
CB A:CYS458 3.4 18.4 1.0
HB3 A:CYS458 3.7 22.1 1.0
HB2 A:PHE471 3.8 22.4 1.0
HB2 A:PHE460 4.0 21.7 1.0
O A:HOH683 4.0 22.8 1.0
HD2 A:PHE460 4.1 20.9 1.0
ND1 A:HIS473 4.2 19.9 1.0
CG A:HIS473 4.3 20.5 1.0
HH21 A:ARG477 4.4 25.0 1.0
NH2 A:ARG477 4.5 20.9 1.0
HB3 A:ASN466 4.5 21.7 1.0
H2 C:A5 4.5 20.0 1.0
H A:PHE460 4.6 20.0 1.0
H61 C:A6 4.6 23.4 1.0
HH22 A:ARG477 4.6 25.0 1.0
HD2 A:PHE471 4.7 23.2 1.0
H A:PHE471 4.7 20.3 1.0
CA A:CYS464 4.7 18.6 1.0
CA A:CYS469 4.7 17.4 1.0
CA A:CYS458 4.7 17.8 1.0
HA A:CYS458 4.8 21.3 1.0
CZ A:ARG477 4.8 21.2 1.0
CB A:PHE471 4.8 18.7 1.0
H62 C:A6 4.8 23.4 1.0
CB A:PHE460 4.9 18.1 1.0
HD1 A:HIS473 4.9 23.9 1.0
HA A:CYS464 4.9 22.4 1.0
N6 C:A6 5.0 19.5 1.0

Zinc binding site 4 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 4 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn504

b:33.4
occ:0.47
O A:HOH614 2.0 50.4 1.0
O A:HOH621 2.1 44.8 1.0
OE1 A:GLU413 2.1 32.6 1.0
O G:HOH138 2.2 57.9 1.0
O A:HOH680 2.4 54.6 1.0
N7 G:A3 2.6 29.8 1.0
H62 G:A3 3.0 31.6 1.0
CD A:GLU413 3.1 33.2 1.0
OE2 A:GLU413 3.4 34.2 1.0
C8 G:A3 3.5 29.4 1.0
H8 G:A3 3.6 35.3 1.0
C5 G:A3 3.6 27.6 1.0
N6 G:A3 3.7 26.4 1.0
OH A:TYR428 4.0 32.8 1.0
C6 G:A3 4.1 26.3 1.0
HH A:TYR428 4.2 39.3 1.0
CZ A:TYR428 4.4 29.6 1.0
H61 G:A3 4.5 31.6 1.0
CG A:GLU413 4.5 29.2 1.0
HG2 A:GLU413 4.5 35.0 1.0
HE1 A:TYR428 4.7 32.4 1.0
CE1 A:TYR428 4.7 27.0 1.0
N9 G:A3 4.8 30.1 1.0
C4 G:A3 4.8 27.6 1.0
HG3 A:GLU413 4.9 35.0 1.0
OP2 G:A3 4.9 59.0 1.0
CE2 A:TYR428 5.0 25.5 1.0

Zinc binding site 5 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 5 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:17.0
occ:1.00
NE2 B:HIS430 2.1 16.3 1.0
SG B:CYS426 2.3 18.8 1.0
SG B:CYS415 2.3 17.8 1.0
SG B:CYS421 2.3 17.1 1.0
HB2 B:CYS421 3.0 20.5 1.0
HB2 B:CYS415 3.1 20.9 1.0
CE1 B:HIS430 3.1 17.0 1.0
CD2 B:HIS430 3.1 15.7 1.0
CB B:CYS421 3.2 17.1 1.0
CB B:CYS426 3.2 20.7 1.0
HB2 B:CYS426 3.2 24.8 1.0
HE1 B:HIS430 3.3 20.4 1.0
HB3 B:CYS426 3.3 24.8 1.0
HD2 B:HIS430 3.3 18.8 1.0
CB B:CYS415 3.3 17.5 1.0
HB3 B:CYS421 3.3 20.5 1.0
HB3 B:CYS415 3.7 20.9 1.0
O H:HOH119 3.9 29.2 1.0
H2 H:A3 4.0 27.9 1.0
HB2 B:TYR428 4.1 22.2 1.0
O B:HOH685 4.2 38.0 1.0
ND1 B:HIS430 4.2 18.8 1.0
CG B:HIS430 4.2 16.8 1.0
HB3 B:ASN423 4.2 24.4 1.0
HD2 B:PHE417 4.3 22.7 1.0
HB2 B:PHE417 4.3 21.0 1.0
H61 D:A4 4.4 21.7 1.0
H B:TYR428 4.5 22.1 1.0
CA B:CYS421 4.6 17.1 1.0
CA B:CYS415 4.6 17.3 1.0
C2 H:A3 4.6 23.2 1.0
HA B:CYS415 4.7 20.7 1.0
HD2 B:TYR428 4.7 26.8 1.0
CA B:CYS426 4.7 20.1 1.0
H B:PHE417 4.7 19.2 1.0
HA B:CYS421 4.8 20.5 1.0
HA B:CYS426 4.9 24.1 1.0
HD1 B:HIS430 4.9 22.6 1.0
H B:ASN423 5.0 23.0 1.0

Zinc binding site 6 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 6 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:19.1
occ:1.00
NE2 B:HIS452 2.1 18.1 1.0
SG B:CYS443 2.4 19.8 1.0
SG B:CYS437 2.4 20.1 1.0
SG B:CYS448 2.4 18.2 1.0
CE1 B:HIS452 3.0 17.8 1.0
HB2 B:CYS443 3.1 25.1 1.0
HB2 B:CYS437 3.1 22.4 1.0
CB B:CYS443 3.1 21.0 1.0
CD2 B:HIS452 3.2 18.5 1.0
HE1 B:HIS452 3.2 21.3 1.0
HB3 B:CYS443 3.2 25.1 1.0
HB3 B:CYS448 3.2 23.4 1.0
CB B:CYS448 3.3 19.5 1.0
CB B:CYS437 3.3 18.6 1.0
HD2 B:HIS452 3.4 22.2 1.0
HB2 B:CYS448 3.4 23.4 1.0
HB3 B:CYS437 3.6 22.4 1.0
HH12 B:ARG429 3.7 25.3 1.0
O C:HOH152 3.8 45.5 1.0
HB2 B:PHE450 3.9 21.6 1.0
HB2 B:GLU439 3.9 33.9 1.0
O C:HOH141 4.0 30.8 1.0
NH1 B:ARG429 4.1 21.1 1.0
ND1 B:HIS452 4.2 18.5 1.0
H61 C:A11 4.2 25.1 1.0
CG B:HIS452 4.3 19.2 1.0
HH11 B:ARG429 4.3 25.3 1.0
H B:PHE450 4.4 20.2 1.0
HB3 B:ARG445 4.5 24.2 1.0
CA B:CYS443 4.6 21.2 1.0
HH22 B:ARG429 4.7 24.7 1.0
CA B:CYS437 4.7 18.8 1.0
CA B:CYS448 4.7 18.4 1.0
H B:GLU439 4.7 28.9 1.0
HA B:CYS437 4.8 22.6 1.0
HD2 B:PHE450 4.8 22.1 1.0
N6 C:A11 4.8 20.9 1.0
O B:PHE450 4.8 19.2 1.0
CB B:PHE450 4.8 18.0 1.0
CB B:GLU439 4.9 28.3 1.0
HA B:CYS443 4.9 25.5 1.0
H62 C:A11 4.9 25.1 1.0
CZ B:ARG429 4.9 19.1 1.0
H B:ARG445 4.9 25.1 1.0
HD1 B:HIS452 4.9 22.2 1.0

Zinc binding site 7 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 7 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn503

b:20.8
occ:1.00
NE2 B:HIS473 2.1 21.4 1.0
SG B:CYS458 2.4 20.8 1.0
SG B:CYS469 2.4 19.9 1.0
SG B:CYS464 2.4 21.5 1.0
CE1 B:HIS473 3.0 23.3 1.0
CD2 B:HIS473 3.1 23.3 1.0
HB2 B:CYS464 3.1 27.6 1.0
HB2 B:CYS458 3.1 27.0 1.0
HE1 B:HIS473 3.2 28.0 1.0
CB B:CYS464 3.2 23.0 1.0
HB3 B:CYS464 3.2 27.6 1.0
HB3 B:CYS469 3.2 24.3 1.0
CB B:CYS469 3.3 20.2 1.0
CB B:CYS458 3.3 22.5 1.0
HD2 B:HIS473 3.3 28.0 1.0
HB2 B:CYS469 3.4 24.3 1.0
HB3 B:CYS458 3.6 27.0 1.0
HB2 B:PHE471 3.7 24.6 1.0
HB2 B:PHE460 4.0 27.9 1.0
O D:HOH134 4.0 21.1 1.0
HD2 B:PHE460 4.1 29.0 1.0
ND1 B:HIS473 4.2 23.9 1.0
HH11 B:ARG477 4.2 35.9 1.0
CG B:HIS473 4.2 24.0 1.0
NH1 B:ARG477 4.3 29.9 1.0
H61 D:A6 4.5 26.6 1.0
H2 D:A5 4.6 24.5 1.0
HD2 B:PHE471 4.6 22.1 1.0
HB3 B:ASN466 4.6 23.1 1.0
HH12 B:ARG477 4.6 35.9 1.0
H B:PHE471 4.6 23.4 1.0
H B:PHE460 4.6 28.5 1.0
CA B:CYS464 4.7 24.5 1.0
H62 D:A6 4.7 26.6 1.0
CA B:CYS458 4.7 22.4 1.0
CB B:PHE471 4.7 20.5 1.0
CZ B:ARG477 4.7 31.0 1.0
HE B:ARG477 4.7 35.9 1.0
HA B:CYS458 4.7 26.9 1.0
CA B:CYS469 4.8 19.0 1.0
NE B:ARG477 4.9 29.9 1.0
N6 D:A6 4.9 22.2 1.0
CB B:PHE460 4.9 23.3 1.0
HD1 B:HIS473 4.9 28.7 1.0
HA B:CYS464 5.0 29.4 1.0
CD2 B:PHE460 5.0 24.1 1.0

Zinc binding site 8 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 8 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn501

b:17.7
occ:1.00
NE2 E:HIS430 2.1 18.2 1.0
SG E:CYS421 2.3 17.9 1.0
SG E:CYS415 2.3 17.8 1.0
SG E:CYS426 2.4 19.5 1.0
HB2 E:CYS421 3.0 22.7 1.0
CD2 E:HIS430 3.1 18.0 1.0
CE1 E:HIS430 3.1 20.2 1.0
HB2 E:CYS415 3.1 21.1 1.0
CB E:CYS421 3.2 18.9 1.0
HD2 E:HIS430 3.2 21.6 1.0
CB E:CYS426 3.3 20.6 1.0
HE1 E:HIS430 3.3 24.3 1.0
HB2 E:CYS426 3.3 24.7 1.0
HB3 E:CYS426 3.3 24.7 1.0
CB E:CYS415 3.3 17.6 1.0
HB3 E:CYS421 3.3 22.7 1.0
HB3 E:CYS415 3.7 21.1 1.0
HB2 E:TYR428 4.0 23.3 1.0
ND1 E:HIS430 4.2 20.6 1.0
CG E:HIS430 4.2 19.3 1.0
O E:HOH670 4.2 29.3 1.0
O E:HOH658 4.2 43.5 1.0
HB3 E:ASN423 4.3 28.5 1.0
H2 D:A3 4.3 22.3 1.0
H61 H:A4 4.3 23.0 1.0
HD2 E:PHE417 4.3 22.5 1.0
HB2 E:PHE417 4.4 21.6 1.0
HD2 E:TYR428 4.5 26.2 1.0
H E:TYR428 4.5 25.6 1.0
CA E:CYS421 4.6 18.5 1.0
CA E:CYS415 4.6 16.4 1.0
HA E:CYS415 4.6 19.6 1.0
CA E:CYS426 4.7 21.8 1.0
HA E:CYS421 4.8 22.2 1.0
H E:PHE417 4.8 20.0 1.0
H E:ASN423 4.9 26.6 1.0
HA E:CYS426 4.9 26.2 1.0
CB E:TYR428 4.9 19.4 1.0
C2 D:A3 4.9 18.6 1.0
HD1 E:HIS430 4.9 24.7 1.0
N6 H:A4 5.0 19.2 1.0

Zinc binding site 9 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 9 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn502

b:20.6
occ:1.00
NE2 E:HIS452 2.1 19.4 1.0
SG E:CYS448 2.4 21.0 1.0
SG E:CYS437 2.4 23.5 1.0
SG E:CYS443 2.4 21.7 1.0
CE1 E:HIS452 3.0 18.5 1.0
HB2 E:CYS437 3.1 26.8 1.0
HE1 E:HIS452 3.1 22.2 1.0
HB2 E:CYS443 3.1 26.7 1.0
CB E:CYS443 3.1 22.3 1.0
HB3 E:CYS443 3.1 26.7 1.0
CD2 E:HIS452 3.2 18.1 1.0
HB3 E:CYS448 3.3 26.5 1.0
CB E:CYS437 3.3 22.3 1.0
CB E:CYS448 3.3 22.1 1.0
HD2 E:HIS452 3.4 21.8 1.0
HB2 E:CYS448 3.5 26.5 1.0
HB3 E:CYS437 3.6 26.8 1.0
HH12 E:ARG429 3.7 26.3 1.0
HB2 E:PHE450 3.9 24.1 1.0
O G:HOH135 3.9 33.7 1.0
HB2 E:GLU439 4.1 43.0 1.0
NH1 E:ARG429 4.1 21.9 1.0
ND1 E:HIS452 4.1 18.2 1.0
H61 G:A11 4.2 31.2 1.0
CG E:HIS452 4.3 18.2 1.0
HH11 E:ARG429 4.3 26.3 1.0
HB3 E:ARG445 4.4 28.7 1.0
H E:PHE450 4.5 21.2 1.0
CA E:CYS443 4.6 22.5 1.0
CA E:CYS437 4.6 23.0 1.0
HH22 E:ARG429 4.7 24.3 1.0
HA E:CYS437 4.7 27.6 1.0
H E:GLU439 4.8 37.0 1.0
N6 G:A11 4.8 26.0 1.0
CA E:CYS448 4.8 21.7 1.0
O E:HOH715 4.8 50.1 1.0
H62 G:A11 4.8 31.2 1.0
HD2 E:PHE450 4.8 26.2 1.0
CB E:PHE450 4.8 20.1 1.0
O E:PHE450 4.9 20.1 1.0
CZ E:ARG429 4.9 19.9 1.0
H E:ARG445 4.9 27.8 1.0
HD1 E:HIS452 4.9 21.9 1.0
HA E:CYS443 4.9 27.0 1.0

Zinc binding site 10 out of 14 in 5l2l

Go back to Zinc Binding Sites List in 5l2l
Zinc binding site 10 out of 14 in the NAB2 Zn Fingers 5-7 Bound to A11G Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of NAB2 Zn Fingers 5-7 Bound to A11G Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn503

b:16.4
occ:1.00
NE2 E:HIS473 2.1 16.3 1.0
SG E:CYS458 2.3 16.8 1.0
SG E:CYS469 2.4 16.5 1.0
SG E:CYS464 2.4 17.5 1.0
CE1 E:HIS473 3.1 16.0 1.0
CD2 E:HIS473 3.1 16.6 1.0
HB2 E:CYS464 3.1 21.2 1.0
HB3 E:CYS469 3.2 19.5 1.0
HB2 E:CYS458 3.2 19.6 1.0
CB E:CYS464 3.2 17.7 1.0
HE1 E:HIS473 3.2 19.2 1.0
HB3 E:CYS464 3.3 21.2 1.0
CB E:CYS469 3.3 16.2 1.0
HD2 E:HIS473 3.3 19.9 1.0
CB E:CYS458 3.4 16.3 1.0
HB2 E:CYS469 3.4 19.5 1.0
HB3 E:CYS458 3.7 19.6 1.0
HB2 E:PHE471 3.7 19.9 1.0
HB2 E:PHE460 3.9 23.2 1.0
O H:HOH121 4.0 19.8 1.0
HD2 E:PHE460 4.1 27.4 1.0
ND1 E:HIS473 4.2 16.8 1.0
CG E:HIS473 4.2 15.5 1.0
HH21 E:ARG477 4.2 27.6 1.0
NH2 E:ARG477 4.4 23.0 1.0
H61 H:A6 4.5 25.0 1.0
H2 H:A5 4.5 19.6 1.0
HB3 E:ASN466 4.6 21.6 1.0
H E:PHE471 4.6 19.6 1.0
H E:PHE460 4.6 19.3 1.0
H62 H:A6 4.6 25.0 1.0
HH22 E:ARG477 4.7 27.6 1.0
CA E:CYS464 4.7 19.8 1.0
HD2 E:PHE471 4.7 20.1 1.0
CB E:PHE471 4.7 16.6 1.0
CA E:CYS458 4.7 14.7 1.0
CA E:CYS469 4.7 16.1 1.0
HA E:CYS458 4.8 17.6 1.0
CZ E:ARG477 4.8 21.8 1.0
HE E:ARG477 4.8 24.3 1.0
N6 H:A6 4.8 20.8 1.0
CB E:PHE460 4.9 19.3 1.0
NE E:ARG477 4.9 20.3 1.0
HA E:CYS464 4.9 23.7 1.0
CD2 E:PHE460 5.0 22.9 1.0
HD1 E:HIS473 5.0 20.2 1.0

Reference:

S.Aibara, J.M.Gordon, A.S.Riesterer, S.H.Mclaughlin, M.Stewart. Structural Basis For the Dimerization of NAB2 Generated By Rna Binding Provides Insight Into Its Contribution to Both Poly(A) Tail Length Determination and Transcript Compaction in Saccharomyces Cerevisiae. Nucleic Acids Res. V. 45 1529 2017.
ISSN: ESSN 1362-4962
PubMed: 28180315
DOI: 10.1093/NAR/GKW1224
Page generated: Thu Aug 21 04:30:32 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy