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Zinc in PDB 5kia: Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis

Enzymatic activity of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis:
1.1.1.103;

Protein crystallography data

The structure of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis, PDB code: 5kia was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.96 / 2.10
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 91.770, 91.770, 173.650, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22.6

Other elements in 5kia:

The structure of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis (pdb code 5kia). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis, PDB code: 5kia:

Zinc binding site 1 out of 1 in 5kia

Go back to Zinc Binding Sites List in 5kia
Zinc binding site 1 out of 1 in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:47.3
occ:1.00
 SG A:CYS96 2.3 56.0 1.0
SG A:CYS99 2.4 53.9 1.0
SG A:CYS107 2.4 63.1 1.0
SG A:CYS93 2.5 56.5 1.0
CB A:CYS107 2.9 57.0 1.0
CB A:CYS99 3.2 48.7 1.0
CB A:CYS96 3.3 64.9 1.0
CB A:CYS93 3.5 63.2 1.0
N A:GLY94 3.6 55.5 1.0
N A:CYS93 3.7 58.0 1.0
CA A:CYS107 3.8 64.4 1.0
O A:HOH582 3.8 48.5 1.0
N A:CYS96 3.9 55.6 1.0
CA A:CYS93 4.0 55.9 1.0
N A:CYS99 4.0 54.2 1.0
CA A:CYS99 4.1 46.2 1.0
CA A:CYS96 4.2 53.6 1.0
C A:CYS93 4.2 58.8 1.0
N A:PHE95 4.5 48.1 1.0
CB A:THR92 4.6 60.0 1.0
CA A:GLY94 4.6 53.7 1.0
C A:CYS107 4.7 66.6 1.0
N A:ARG108 4.7 61.4 1.0
OG1 A:THR92 4.8 55.1 1.0
C A:THR92 4.8 54.3 1.0
N A:CYS107 4.9 61.1 1.0
C A:CYS96 4.9 52.9 1.0
C A:GLY94 5.0 50.9 1.0

Reference:

J.Abendroth, C.M.Lukacs, D.D.Lorimer, T.E.Edwards. Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis To Be Published.
Page generated: Sun Oct 27 20:25:49 2024

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