Atomistry » Zinc » PDB 5jf2-5jmz » 5ji5
Atomistry »
  Zinc »
    PDB 5jf2-5jmz »
      5ji5 »

Zinc in PDB 5ji5: Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum

Protein crystallography data

The structure of Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum, PDB code: 5ji5 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.80 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 66.380, 127.870, 68.680, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 23.5

Other elements in 5ji5:

The structure of Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum also contains other interesting chemical elements:

Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum (pdb code 5ji5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum, PDB code: 5ji5:

Zinc binding site 1 out of 1 in 5ji5

Go back to Zinc Binding Sites List in 5ji5
Zinc binding site 1 out of 1 in the Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:21.2
occ:1.00
ND1 A:HIS165 2.0 17.7 1.0
OD2 A:ASP163 2.1 18.3 1.0
OD2 A:ASP244 2.1 15.6 1.0
O A:HOH523 2.3 30.1 1.0
O A:HOH503 2.4 10.7 1.0
CG A:ASP163 2.8 9.5 1.0
OD1 A:ASP163 2.8 14.7 1.0
CE1 A:HIS165 2.9 15.8 1.0
CG A:ASP244 3.1 12.2 1.0
CG A:HIS165 3.1 14.9 1.0
OD1 A:ASP244 3.4 11.9 1.0
CB A:HIS165 3.5 9.8 1.0
O2 A:EDO403 3.5 38.1 1.0
N A:HIS165 3.9 15.8 1.0
C2 A:EDO403 4.0 35.1 1.0
CG1 A:VAL164 4.0 13.0 1.0
NE2 A:HIS165 4.1 14.5 1.0
CD2 A:HIS165 4.2 12.8 1.0
CA A:GLY286 4.2 15.9 1.0
CB A:ASP163 4.3 9.5 1.0
NE2 A:HIS125 4.3 13.2 1.0
CA A:HIS165 4.4 14.9 1.0
CB A:ASP244 4.4 12.5 1.0
N A:VAL164 4.5 10.2 1.0
OH A:TYR288 4.6 13.5 1.0
N A:GLY286 4.6 15.2 1.0
CE2 A:TYR288 4.6 15.7 1.0
NE2 A:HIS126 4.7 20.3 1.0
CE1 A:HIS125 4.9 10.2 1.0
C A:VAL164 4.9 18.4 1.0

Reference:

D.M.Dranow, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum To Be Published.
Page generated: Sun Oct 27 18:57:10 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy