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Zinc in PDB 5jea: Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna

Enzymatic activity of Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna

All present enzymatic activity of Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna:
3.2.1.17;

Protein crystallography data

The structure of Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna, PDB code: 5jea was solved by E.Kowalinski, J.Ebert, E.Stegmann, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.69 / 2.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 106.080, 182.530, 250.550, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 25.9

Other elements in 5jea:

The structure of Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna (pdb code 5jea). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna, PDB code: 5jea:

Zinc binding site 1 out of 1 in 5jea

Go back to Zinc Binding Sites List in 5jea
Zinc binding site 1 out of 1 in the Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1102

b:74.6
occ:1.00
NE2 J:HIS184 2.2 91.1 1.0
SG J:CYS52 2.3 74.7 1.0
SG J:CYS55 2.3 0.1 1.0
SG J:CYS47 2.4 0.5 1.0
CD2 J:HIS184 2.9 88.4 1.0
CB J:CYS52 3.1 85.4 1.0
CE1 J:HIS184 3.2 88.8 1.0
CB J:CYS47 3.3 81.5 1.0
CB J:CYS55 3.3 66.3 1.0
CG J:HIS184 4.1 88.0 1.0
ND1 J:HIS184 4.2 90.1 1.0
N J:CYS47 4.3 80.2 1.0
N J:CYS55 4.3 95.7 1.0
CA J:CYS47 4.4 81.1 1.0
CA J:CYS55 4.4 86.8 1.0
CA J:CYS52 4.6 91.5 1.0
CG J:LYS54 4.7 93.2 1.0
CH2 J:TRP180 4.9 60.9 1.0

Reference:

E.Kowalinski, A.Kogel, J.Ebert, P.Reichelt, E.Stegmann, B.Habermann, E.Conti. Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex. Mol.Cell V. 63 125 2016.
ISSN: ISSN 1097-2765
PubMed: 27345150
DOI: 10.1016/J.MOLCEL.2016.05.028
Page generated: Sun Oct 27 18:45:51 2024

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