Zinc in PDB 5gad: Rnc-Srp-Sr Complex Early State

The structure of Rnc-Srp-Sr Complex Early State also contains other interesting chemical elements:

Magnesium

(Mg)

433 atoms

The binding sites of Zinc atom in the Rnc-Srp-Sr Complex Early State (pdb code 5gad). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rnc-Srp-Sr Complex Early State, PDB code: 5gad:

Zinc binding site 1 out of 1 in the Rnc-Srp-Sr Complex Early State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rnc-Srp-Sr Complex Early State within 5.0Å range: probe atom residue distance (Å) B Occ f:Zn101 b:60.0 occ:1.00 SG f:CYS14 2.2 60.0 1.0 ND1 f:HIS33 2.3 60.0 1.0 SG f:CYS11 2.4 60.0 1.0 SG f:CYS27 2.4 60.0 1.0 CE1 f:HIS33 3.1 60.0 1.0 CG f:HIS33 3.4 60.0 1.0 CB f:CYS27 3.5 60.0 1.0 CB f:CYS11 3.7 60.0 1.0 CB f:CYS14 3.8 60.0 1.0 CB f:HIS33 3.8 60.0 1.0 N f:CYS14 3.8 60.0 1.0 CA f:CYS14 4.1 60.0 1.0 N f:CYS11 4.2 60.0 1.0 NE2 f:HIS33 4.3 60.0 1.0 CB f:GLU30 4.3 60.0 1.0 C f:ASN13 4.3 60.0 1.0 CD2 f:HIS33 4.4 60.0 1.0 CA f:CYS11 4.4 60.0 1.0 CB f:ASN13 4.6 60.0 1.0 N f:ASN13 4.7 60.0 1.0 C f:LEU10 4.7 60.0 1.0 N f:GLU30 4.8 60.0 1.0 CA f:ASN13 4.8 60.0 1.0 CA f:CYS27 4.8 60.0 1.0 C f:CYS11 4.9 60.0 1.0 O f:ASN13 4.9 60.0 1.0 CB f:ALA29 4.9 60.0 1.0 O f:GLU30 4.9 60.0 1.0 CB f:LEU10 5.0 60.0 1.0

A.Jomaa, D.Boehringer, M.Leibundgut, N.Ban. Structures of the E. Coli Translating Ribosome with Srp and Its Receptor and with the Translocon. Nat Commun V. 7 10471 2016.
ISSN: ESSN 2041-1723
PubMed: 26804923
DOI: 10.1038/NCOMMS10471