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Zinc in PDB 5eio: Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde

Enzymatic activity of Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde

All present enzymatic activity of Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde:
1.2.1.38;

Protein crystallography data

The structure of Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde, PDB code: 5eio was solved by T.Shimizu, T.Tomita, M.Nishiyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.37 / 1.80
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.530, 83.530, 168.321, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 21.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde (pdb code 5eio). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde, PDB code: 5eio:

Zinc binding site 1 out of 1 in 5eio

Go back to Zinc Binding Sites List in 5eio
Zinc binding site 1 out of 1 in the Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lysy From Thermus Thermophilus Complexed with Nadp+ and Lysw-Gamma-Aminoadipic Semialdehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn101

b:41.2
occ:1.00
 SG C:CYS8 2.3 44.3 1.0
SG C:CYS25 2.3 43.6 1.0
SG C:CYS5 2.4 40.7 1.0
SG C:CYS28 2.4 44.5 1.0
CB C:CYS25 3.2 46.3 1.0
CB C:CYS8 3.2 43.2 1.0
CB C:CYS5 3.3 38.4 1.0
CB C:CYS28 3.4 46.2 1.0
N C:CYS8 3.7 43.1 1.0
N C:CYS28 3.9 47.0 1.0
CA C:CYS8 4.0 43.1 1.0
CA C:CYS28 4.2 46.2 1.0
CB C:ALA10 4.5 42.9 1.0
CB C:GLU7 4.5 49.0 1.0
CA C:CYS25 4.7 48.2 1.0
CA C:CYS5 4.7 39.9 1.0
C C:CYS8 4.7 40.7 1.0
C C:GLU7 4.7 43.1 1.0
CB C:ASP27 4.7 55.2 1.0
N C:ALA10 4.8 39.9 1.0
N C:GLY9 4.8 39.2 1.0
CB C:ALA30 4.9 47.8 1.0
C C:CYS28 4.9 45.6 1.0
C C:ASP27 4.9 51.2 1.0

Reference:

T.Shimizu, T.Tomita, T.Kuzuyama, M.Nishiyama. Crystal Structure of the Lysylysw Complex From Thermus Thermophilus. J.Biol.Chem. 2016.
ISSN: ESSN 1083-351X
PubMed: 26966182
DOI: 10.1074/JBC.M115.707034
Page generated: Sun Oct 27 15:22:20 2024

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