Zinc in PDB 5ece: Tankyrase 1 with Phthalazinone 1
Enzymatic activity of Tankyrase 1 with Phthalazinone 1
All present enzymatic activity of Tankyrase 1 with Phthalazinone 1:
2.4.2.30;
Protein crystallography data
The structure of Tankyrase 1 with Phthalazinone 1, PDB code: 5ece
was solved by
S.L.Kazmirski,
J.Johannes,
J.A.Read,
T.Howard,
N.A.Larsen,
A.D.Ferguson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.00 /
2.20
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.970,
59.980,
77.190,
86.21,
78.89,
89.06
|
R / Rfree (%)
|
18.1 /
22.4
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Tankyrase 1 with Phthalazinone 1
(pdb code 5ece). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Tankyrase 1 with Phthalazinone 1, PDB code: 5ece:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 5ece
Go back to
Zinc Binding Sites List in 5ece
Zinc binding site 1 out
of 4 in the Tankyrase 1 with Phthalazinone 1
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Tankyrase 1 with Phthalazinone 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1403
b:32.1
occ:1.00
|
ND1
|
A:HIS1237
|
2.0
|
38.0
|
1.0
|
SG
|
A:CYS1242
|
2.2
|
26.9
|
1.0
|
SG
|
A:CYS1245
|
2.4
|
36.5
|
1.0
|
SG
|
A:CYS1234
|
2.4
|
33.3
|
1.0
|
CE1
|
A:HIS1237
|
2.9
|
37.0
|
1.0
|
CG
|
A:HIS1237
|
3.2
|
36.4
|
1.0
|
CB
|
A:CYS1234
|
3.3
|
30.0
|
1.0
|
CB
|
A:CYS1245
|
3.3
|
30.6
|
1.0
|
CB
|
A:CYS1242
|
3.4
|
24.4
|
1.0
|
CB
|
A:HIS1237
|
3.6
|
32.7
|
1.0
|
N
|
A:HIS1237
|
4.0
|
31.8
|
1.0
|
N
|
A:CYS1245
|
4.0
|
30.5
|
1.0
|
NE2
|
A:HIS1237
|
4.1
|
38.6
|
1.0
|
CD2
|
A:HIS1237
|
4.3
|
39.3
|
1.0
|
CA
|
A:CYS1245
|
4.3
|
29.6
|
1.0
|
CA
|
A:HIS1237
|
4.4
|
32.5
|
1.0
|
CB
|
A:THR1236
|
4.6
|
38.5
|
1.0
|
CA
|
A:CYS1242
|
4.7
|
24.9
|
1.0
|
CA
|
A:CYS1234
|
4.7
|
31.3
|
1.0
|
CB
|
A:ILE1244
|
4.8
|
29.4
|
1.0
|
C
|
A:THR1236
|
4.9
|
35.7
|
1.0
|
|
Zinc binding site 2 out
of 4 in 5ece
Go back to
Zinc Binding Sites List in 5ece
Zinc binding site 2 out
of 4 in the Tankyrase 1 with Phthalazinone 1
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Tankyrase 1 with Phthalazinone 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1404
b:25.4
occ:1.00
|
ND1
|
B:HIS1237
|
2.0
|
29.5
|
1.0
|
SG
|
B:CYS1242
|
2.3
|
23.7
|
1.0
|
SG
|
B:CYS1245
|
2.4
|
31.4
|
1.0
|
SG
|
B:CYS1234
|
2.4
|
28.9
|
1.0
|
CE1
|
B:HIS1237
|
2.9
|
26.5
|
1.0
|
CG
|
B:HIS1237
|
3.1
|
28.7
|
1.0
|
CB
|
B:CYS1234
|
3.3
|
25.0
|
1.0
|
CB
|
B:CYS1245
|
3.3
|
26.5
|
1.0
|
CB
|
B:CYS1242
|
3.4
|
21.4
|
1.0
|
CB
|
B:HIS1237
|
3.6
|
25.9
|
1.0
|
N
|
B:HIS1237
|
4.0
|
29.2
|
1.0
|
N
|
B:CYS1245
|
4.0
|
27.2
|
1.0
|
NE2
|
B:HIS1237
|
4.0
|
27.4
|
1.0
|
CD2
|
B:HIS1237
|
4.2
|
28.5
|
1.0
|
CA
|
B:CYS1245
|
4.3
|
27.0
|
1.0
|
O
|
B:HOH1516
|
4.3
|
19.6
|
1.0
|
O
|
B:HOH1502
|
4.4
|
39.9
|
1.0
|
CA
|
B:HIS1237
|
4.4
|
27.1
|
1.0
|
CB
|
B:THR1236
|
4.5
|
32.1
|
1.0
|
CA
|
B:CYS1234
|
4.7
|
24.8
|
1.0
|
CB
|
B:ILE1244
|
4.8
|
27.9
|
1.0
|
CA
|
B:CYS1242
|
4.8
|
22.1
|
1.0
|
C
|
B:THR1236
|
4.9
|
34.7
|
1.0
|
O
|
B:HOH1550
|
4.9
|
33.9
|
1.0
|
|
Zinc binding site 3 out
of 4 in 5ece
Go back to
Zinc Binding Sites List in 5ece
Zinc binding site 3 out
of 4 in the Tankyrase 1 with Phthalazinone 1
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Tankyrase 1 with Phthalazinone 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn1404
b:29.7
occ:1.00
|
ND1
|
C:HIS1237
|
2.1
|
29.6
|
1.0
|
SG
|
C:CYS1242
|
2.2
|
26.7
|
1.0
|
SG
|
C:CYS1245
|
2.3
|
31.8
|
1.0
|
SG
|
C:CYS1234
|
2.4
|
31.5
|
1.0
|
CE1
|
C:HIS1237
|
2.9
|
28.2
|
1.0
|
CB
|
C:CYS1234
|
3.3
|
27.3
|
1.0
|
CB
|
C:CYS1242
|
3.3
|
23.6
|
1.0
|
CG
|
C:HIS1237
|
3.3
|
29.2
|
1.0
|
CB
|
C:CYS1245
|
3.3
|
27.3
|
1.0
|
CB
|
C:HIS1237
|
3.7
|
25.6
|
1.0
|
N
|
C:CYS1245
|
4.0
|
28.3
|
1.0
|
N
|
C:HIS1237
|
4.0
|
26.4
|
1.0
|
NE2
|
C:HIS1237
|
4.1
|
30.0
|
1.0
|
CA
|
C:CYS1245
|
4.3
|
27.3
|
1.0
|
CD2
|
C:HIS1237
|
4.3
|
30.9
|
1.0
|
O
|
C:HOH1522
|
4.5
|
33.3
|
1.0
|
CA
|
C:HIS1237
|
4.5
|
26.0
|
1.0
|
CB
|
C:THR1236
|
4.6
|
30.9
|
1.0
|
CA
|
C:CYS1242
|
4.7
|
23.9
|
1.0
|
CA
|
C:CYS1234
|
4.7
|
28.4
|
1.0
|
CB
|
C:ILE1244
|
4.8
|
29.4
|
1.0
|
O
|
C:HOH1545
|
4.8
|
33.9
|
1.0
|
C
|
C:THR1236
|
4.9
|
31.1
|
1.0
|
|
Zinc binding site 4 out
of 4 in 5ece
Go back to
Zinc Binding Sites List in 5ece
Zinc binding site 4 out
of 4 in the Tankyrase 1 with Phthalazinone 1
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Tankyrase 1 with Phthalazinone 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn1404
b:33.4
occ:1.00
|
ND1
|
D:HIS1237
|
1.9
|
29.7
|
1.0
|
SG
|
D:CYS1234
|
2.3
|
37.1
|
1.0
|
SG
|
D:CYS1242
|
2.4
|
27.5
|
1.0
|
SG
|
D:CYS1245
|
2.4
|
32.5
|
1.0
|
CE1
|
D:HIS1237
|
2.8
|
28.0
|
1.0
|
CG
|
D:HIS1237
|
3.1
|
30.5
|
1.0
|
CB
|
D:CYS1234
|
3.3
|
32.5
|
1.0
|
CB
|
D:CYS1245
|
3.4
|
26.7
|
1.0
|
CB
|
D:CYS1242
|
3.5
|
25.4
|
1.0
|
CB
|
D:HIS1237
|
3.5
|
29.8
|
1.0
|
N
|
D:HIS1237
|
3.8
|
34.1
|
1.0
|
NE2
|
D:HIS1237
|
4.0
|
29.1
|
1.0
|
CD2
|
D:HIS1237
|
4.1
|
30.9
|
1.0
|
N
|
D:CYS1245
|
4.2
|
26.1
|
1.0
|
CA
|
D:HIS1237
|
4.3
|
32.5
|
1.0
|
O
|
D:HOH1542
|
4.3
|
35.5
|
1.0
|
CB
|
D:THR1236
|
4.4
|
40.0
|
1.0
|
CA
|
D:CYS1245
|
4.4
|
26.2
|
1.0
|
CA
|
D:CYS1234
|
4.7
|
34.3
|
1.0
|
C
|
D:THR1236
|
4.7
|
40.0
|
1.0
|
O
|
D:HOH1515
|
4.9
|
41.1
|
1.0
|
CA
|
D:CYS1242
|
4.9
|
25.5
|
1.0
|
CA
|
D:THR1236
|
4.9
|
37.0
|
1.0
|
N
|
D:THR1236
|
4.9
|
38.2
|
1.0
|
CB
|
D:ILE1244
|
4.9
|
29.3
|
1.0
|
|
Reference:
J.W.Johannes,
L.Almeida,
K.Daly,
A.D.Ferguson,
S.E.Grosskurth,
H.Guan,
T.Howard,
S.Ioannidis,
S.Kazmirski,
M.L.Lamb,
N.A.Larsen,
P.D.Lyne,
K.Mikule,
C.Ogoe,
B.Peng,
P.Petteruti,
J.A.Read,
N.Su,
M.Sylvester,
S.Throner,
W.Wang,
X.Wang,
J.Wu,
Q.Ye,
Y.Yu,
X.Zheng,
D.A.Scott.
Discovery of AZ0108, An Orally Bioavailable Phthalazinone Parp Inhibitor That Blocks Centrosome Clustering. Bioorg.Med.Chem.Lett. V. 25 5743 2015.
ISSN: ESSN 1464-3405
PubMed: 26546219
DOI: 10.1016/J.BMCL.2015.10.079
Page generated: Sun Oct 27 15:06:52 2024
|