Zinc in PDB 4xrn: Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa

The structure of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa, PDB code: 4xrn was solved by K.K.Chi, Z.L.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.86 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	75.526, 75.526, 195.370, 90.00, 90.00, 90.00
R / Rfree (%)	23.1 / 27.4

The binding sites of Zinc atom in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa (pdb code 4xrn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa, PDB code: 4xrn:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn204 b:29.5 occ:0.42 N7 A:C2E203 1.9 28.9 1.0 C5 A:C2E203 2.7 29.3 1.0 C8 A:C2E203 2.8 26.6 1.0 O6 A:C2E203 3.2 31.8 1.0 C6 A:C2E203 3.4 29.5 1.0 N9 A:C2E203 3.8 32.0 1.0 C4 A:C2E203 3.8 26.4 1.0 O2P A:C2E203 4.7 27.3 1.0 N1 A:C2E203 4.7 35.5 1.0 C21 A:C2E203 4.8 30.1 1.0 N11 A:C2E203 5.0 30.8 1.0 N31 A:C2E203 5.0 31.4 1.0

Zinc binding site 2 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:29.5 occ:0.69 OD2 A:ASP28 1.7 27.3 1.0 CG A:ASP28 2.5 28.4 1.0 OD1 A:ASP28 2.7 25.7 1.0 CD A:ARG18 3.9 32.5 1.0 CB A:ASP28 3.9 27.1 1.0 NE A:ARG16 4.0 27.3 1.0 CG A:ARG18 4.5 31.8 1.0 CD A:ARG16 4.5 32.6 1.0 NH1 A:ARG18 4.7 34.9 1.0 CZ A:ARG16 4.8 29.1 1.0 NH2 A:ARG16 4.9 27.3 1.0

Zinc binding site 3 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn204 b:22.3 occ:0.42 N71 B:C2E203 1.9 23.1 1.0 O B:HOH306 2.6 21.9 1.0 C81 B:C2E203 2.8 20.7 1.0 C51 B:C2E203 2.9 24.1 1.0 O61 B:C2E203 3.4 23.0 1.0 C61 B:C2E203 3.6 25.0 1.0 N91 B:C2E203 3.9 26.0 1.0 C41 B:C2E203 3.9 21.1 1.0 O21 B:C2E203 4.3 27.4 1.0 O5A B:C2E203 4.7 28.6 1.0 N11 B:C2E203 4.9 28.7 1.0 C2 B:C2E203 5.0 24.3 1.0 N3 B:C2E203 5.0 27.4 1.0

Zinc binding site 4 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn205 b:30.5 occ:1.00 O B:HOH313 1.9 30.6 1.0 O B:HOH364 2.0 32.3 1.0 N71 B:C2E202 2.1 25.4 1.0 C81 B:C2E202 3.0 26.5 1.0 C51 B:C2E202 3.2 25.8 1.0 O61 B:C2E202 3.5 33.8 1.0 N2 B:C2E203 3.6 28.0 1.0 C61 B:C2E202 3.8 28.8 1.0 O21 B:C2E202 4.2 33.2 1.0 N1 B:C2E203 4.2 27.3 1.0 N91 B:C2E202 4.2 28.2 1.0 N11 B:C2E201 4.2 33.2 1.0 C2 B:C2E203 4.2 24.3 1.0 C41 B:C2E202 4.3 25.6 1.0 C21 B:C2E201 4.3 29.1 1.0 C61 B:C2E201 4.5 29.7 1.0 N21 B:C2E201 4.6 27.8 1.0 N31 B:C2E201 4.8 29.8 1.0 O5A B:C2E202 4.8 33.1 1.0 O61 B:C2E201 5.0 27.0 1.0

Zinc binding site 5 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range:

Zinc binding site 6 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn207 b:49.4 occ:1.00 O B:HOH367 2.1 33.8 1.0 OD2 B:ASP79 2.3 46.8 1.0 O B:HOH371 2.6 40.5 1.0 CG B:ASP79 3.0 40.5 1.0 OD1 B:ASP79 3.1 38.6 1.0 CB B:ALA81 4.2 37.9 1.0 CB B:ASP79 4.5 37.2 1.0 CD B:PRO80 4.5 38.2 1.0 N B:ALA81 4.7 38.5 1.0

Zinc binding site 7 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn208 b:25.6 occ:0.56 OD2 B:ASP28 1.8 30.8 1.0 O B:HOH366 1.9 16.6 1.0 CG B:ASP28 2.7 25.7 1.0 O B:HOH372 2.8 36.2 1.0 OD1 B:ASP28 3.1 24.7 1.0 CB B:ASP28 4.1 30.9 1.0 CD B:ARG18 4.2 41.7 1.0 NH1 B:ARG18 4.6 45.0 1.0 NE B:ARG16 4.7 25.4 1.0 CB B:ARG18 4.7 31.0 1.0 CG B:ARG18 4.9 40.9 1.0

Zinc binding site 8 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn204 b:23.6 occ:0.67 O C:HOH345 1.9 21.5 1.0 O C:HOH311 2.0 20.7 1.0 O C:HOH323 2.2 25.7 1.0 N71 C:C2E203 2.4 25.7 1.0 C81 C:C2E203 3.3 23.1 1.0 C51 C:C2E203 3.4 26.0 1.0 O C:SER4 3.5 26.8 1.0 O61 C:C2E203 3.7 29.3 1.0 C61 C:C2E203 4.1 26.5 1.0 O21 C:C2E203 4.2 24.8 1.0 N91 C:C2E203 4.4 27.1 1.0 C C:SER4 4.5 28.3 1.0 C41 C:C2E203 4.5 28.4 1.0 N2 C:C2E203 4.6 22.1 1.0 N C:SER4 4.6 25.8 1.0 C2 C:C2E203 4.7 18.9 1.0 O61 C:C2E201 4.9 28.7 1.0 CB C:SER4 4.9 26.7 1.0 CA C:SER4 4.9 30.2 1.0

Zinc binding site 9 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn204 b:22.9 occ:0.65 O D:HOH349 2.0 34.5 1.0 O D:HOH311 2.0 28.2 1.0 O D:HOH320 2.1 29.7 1.0 O D:HOH308 2.4 29.3 1.0 N71 D:C2E203 2.6 28.4 1.0 C81 D:C2E203 3.5 27.8 1.0 C51 D:C2E203 3.5 27.5 1.0 O61 D:C2E203 3.7 34.5 1.0 O D:SER4 3.7 39.5 1.0 C61 D:C2E203 4.1 31.6 1.0 O21 D:C2E203 4.3 39.1 1.0 N2 D:C2E203 4.5 28.4 1.0 C2 D:C2E203 4.6 22.1 1.0 N91 D:C2E203 4.6 26.5 1.0 C41 D:C2E203 4.7 29.9 1.0 C D:SER4 4.8 34.3 1.0 N D:SER4 4.8 34.7 1.0 N1 D:C2E203 4.9 23.9 1.0 O D:PRO2 4.9 35.0 1.0 O61 D:C2E202 4.9 32.8 1.0 N3 D:C2E203 5.0 26.3 1.0

Zinc binding site 10 out of 10 in the Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn205 b:39.8 occ:1.00 N7 D:C2E203 2.0 25.3 1.0 O D:HOH303 2.2 40.9 1.0 C8 D:C2E203 2.8 31.5 1.0 C5 D:C2E203 3.1 29.6 1.0 O6 D:C2E203 3.6 26.1 1.0 N21 D:C2E201 3.7 29.0 1.0 C6 D:C2E203 3.8 25.7 1.0 N9 D:C2E203 4.0 26.6 1.0 C4 D:C2E203 4.1 23.6 1.0 O21 D:C2E202 4.3 27.3 1.0 O2P D:C2E203 4.3 34.2 1.0 C21 D:C2E201 4.8 26.0 1.0

K.K.Chi, Z.L.Yuan. Pilz Domain with C-Di-Gmp of A Protein From Pseudomonas Aeruginosa To Be Published.