Zinc in PDB 4xgm: Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A

All present enzymatic activity of Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A:
3.1.26.5;

The structure of Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A, PDB code: 4xgm was solved by L.Reinhard, S.Sridhara, B.M.Hallberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.07 / 1.98
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	99.040, 99.040, 50.610, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 22.6

The binding sites of Zinc atom in the Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A (pdb code 4xgm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A, PDB code: 4xgm:

Zinc binding site 1 out of 1 in the Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Nuclease Subunit of Human Mitochondrial Rnase P (MRPP3) at 1.98A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:44.3 occ:1.00 NE2 A:HIS557 2.3 47.1 1.0 SG A:CYS578 2.4 46.2 1.0 SG A:CYS351 2.4 63.1 1.0 SG A:CYS348 2.5 53.6 1.0 CD2 A:HIS557 3.0 45.6 1.0 CB A:CYS348 3.1 51.6 1.0 CB A:CYS351 3.2 57.0 1.0 CB A:CYS578 3.3 44.7 1.0 CE1 A:HIS557 3.3 53.1 1.0 N A:CYS351 3.4 62.9 1.0 CA A:CYS351 3.9 57.9 1.0 CG A:HIS557 4.2 44.8 1.0 CA A:CYS578 4.3 46.6 1.0 ND1 A:HIS557 4.4 51.6 1.0 C A:GLY350 4.5 70.8 1.0 CA A:CYS348 4.6 60.3 1.0 CA A:GLY350 4.7 64.0 1.0 C A:CYS351 4.7 61.7 1.0 N A:GLY352 4.8 58.9 1.0 N A:GLY350 4.8 59.8 1.0 O A:HOH702 4.8 73.3 1.0 C A:CYS578 4.9 51.1 1.0

L.Reinhard, S.Sridhara, B.M.Hallberg. Structure of the Nuclease Subunit of Human Mitochondrial Rnase P. Nucleic Acids Res. 2015.
ISSN: ESSN 1362-4962
PubMed: 25953853
DOI: 10.1093/NAR/GKV481