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Zinc in PDB 4uyo: Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution

Enzymatic activity of Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution

All present enzymatic activity of Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution:
2.7.1.107;

Protein crystallography data

The structure of Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution, PDB code: 4uyo was solved by D.Li, N.Howe, O.Other, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.01 / 2.18
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.300, 91.800, 141.700, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 23.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution (pdb code 4uyo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution, PDB code: 4uyo:

Zinc binding site 1 out of 1 in 4uyo

Go back to Zinc Binding Sites List in 4uyo
Zinc binding site 1 out of 1 in the Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of DELTA7-Dgka in 7.9 Mag By Serial Femtosecond Crystatallography to 2.18 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1122

b:50.9
occ:0.46
 OA2 D:FLC1126 1.9 78.4 1.0
OE1 D:GLU76 2.0 69.0 1.0
OE1 D:GLU28 2.1 86.1 1.0
OE2 D:GLU28 2.1 80.2 1.0
OE2 D:GLU76 2.1 86.9 1.0
O D:HOH2004 2.2 60.9 1.0
CD D:GLU28 2.4 65.1 1.0
CD D:GLU76 2.4 67.6 1.0
CAC D:FLC1126 2.7 82.2 1.0
OA1 D:FLC1126 2.9 0.1 1.0
O D:HOH2005 3.6 52.4 1.0
CG D:GLU28 3.8 64.4 1.0
CG D:GLU76 3.9 63.9 1.0
CA D:FLC1126 4.0 94.3 1.0
O D:HOH2014 4.6 45.4 1.0
O D:HOH2029 4.7 86.1 1.0
CB D:GLU76 4.7 53.0 1.0
CB D:GLU28 4.7 46.6 1.0
OHB D:FLC1126 4.9 0.8 1.0
O D:HOH2017 5.0 82.8 1.0

Reference:

D.Li, P.J.Stansfeld, M.S.P.Sansom, A.Keogh, L.Vogeley, N.Howe, J.A.Lyons, D.Aragao, P.Fromme, R.Fromme, S.Basu, I.Grotjohann, C.Kupitz, K.Rendek, U.Weierstall, N.A.Zatsepin, V.Cherezov, W.Liu, S.Bandaru, N.J.English, C.Gati, A.Barty, O.Yefanov, H.N.Chapman, K.Diederichs, M.Messerschmidt, S.Boutet, G.J.Williams, M.Marvin Seibert, M.Caffrey. Ternary Structure Reveals Mechanism of A Membrane Diacylglycerol Kinase. Nat.Commun. V. 6 10140 2015.
ISSN: ESSN 2041-1723
PubMed: 26673816
DOI: 10.1038/NCOMMS10140
Page generated: Wed Aug 20 22:50:30 2025

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