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Zinc in PDB 4oh1: Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution

Enzymatic activity of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution

All present enzymatic activity of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution:
1.1.1.14;

Protein crystallography data

The structure of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution, PDB code: 4oh1 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.36 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 63.870, 85.597, 149.087, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.6

Other elements in 4oh1:

The structure of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution (pdb code 4oh1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution, PDB code: 4oh1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4oh1

Go back to Zinc Binding Sites List in 4oh1
Zinc binding site 1 out of 2 in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:49.8
occ:0.75
 OE2 A:GLU74 2.1 41.9 1.0
OE1 A:GLU156 2.1 34.9 1.0
OD2 A:OCS45 2.3 80.1 1.0
O A:HOH569 2.4 47.2 1.0
O A:HOH526 2.4 38.8 1.0
NE2 A:HIS73 2.4 47.5 1.0
CD A:GLU156 3.0 36.3 1.0
CD A:GLU74 3.1 38.0 1.0
CD2 A:HIS73 3.2 41.1 1.0
SG A:OCS45 3.3 72.6 1.0
OE2 A:GLU156 3.3 35.2 1.0
CG A:GLU74 3.4 34.3 1.0
OD3 A:OCS45 3.4 82.6 1.0
CE1 A:HIS73 3.4 45.3 1.0
CB A:OCS45 4.1 72.1 1.0
OE1 A:GLU74 4.2 37.4 1.0
CD A:PRO157 4.2 34.8 1.0
CB A:PRO157 4.3 35.8 1.0
CA A:PRO157 4.3 35.4 1.0
O A:HOH641 4.3 56.5 1.0
N A:PRO157 4.3 31.1 1.0
CG A:GLU156 4.3 32.5 1.0
CG A:HIS73 4.4 41.3 1.0
ND1 A:HIS73 4.5 50.9 1.0
OD1 A:OCS45 4.5 80.2 1.0
CG A:PRO157 4.6 34.3 1.0
O A:HOH546 4.7 42.1 1.0
CB A:GLU156 4.8 33.0 1.0
C A:GLU156 4.8 33.0 1.0
CB A:GLU74 4.9 31.6 1.0
O A:HOH693 4.9 57.1 1.0

Zinc binding site 2 out of 2 in 4oh1

Go back to Zinc Binding Sites List in 4oh1
Zinc binding site 2 out of 2 in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Gutb) From Clostridium Scindens Atcc 35704 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:47.1
occ:1.00
 SG A:CYS105 2.4 45.6 1.0
SG A:CYS108 2.4 46.0 1.0
SG A:CYS111 2.4 45.0 1.0
SG A:CYS119 2.4 44.5 1.0
CB A:CYS111 3.3 45.3 1.0
CB A:CYS108 3.4 46.7 1.0
CB A:CYS119 3.4 41.8 1.0
CB A:CYS105 3.5 45.1 1.0
N A:CYS105 3.6 44.7 1.0
CA A:CYS119 3.8 46.8 1.0
N A:GLY106 3.8 46.5 1.0
N A:CYS108 3.8 46.8 1.0
N A:SER120 3.9 49.1 1.0
CA A:CYS105 4.0 44.1 1.0
CA A:CYS108 4.2 49.2 1.0
C A:CYS119 4.2 47.0 1.0
C A:CYS105 4.3 46.9 1.0
N A:ASN121 4.3 54.4 1.0
CA A:CYS111 4.3 43.9 1.0
N A:CYS111 4.3 44.8 1.0
N A:CYS107 4.4 43.4 1.0
C A:TYR104 4.8 45.5 1.0
C A:CYS108 4.8 50.8 1.0
OD1 A:ASN121 4.8 66.7 1.0
CA A:GLY106 4.8 42.2 1.0
O A:CYS108 4.9 49.9 1.0
C A:CYS107 4.9 46.5 1.0
CA A:SER120 4.9 54.2 1.0
CB A:ASN121 5.0 58.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Oct 27 03:42:56 2024

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