Atomistry » Zinc » PDB 4nuo-4o6s » 4nx4
Atomistry »
  Zinc »
    PDB 4nuo-4o6s »
      4nx4 »

Zinc in PDB 4nx4: Re-Refinement of Cap-1 Hiv-Ca Complex

Protein crystallography data

The structure of Re-Refinement of Cap-1 Hiv-Ca Complex, PDB code: 4nx4 was solved by P.T.Lang, J.M.Holton, J.S.Fraser, T.Alber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.15 / 1.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 42.187, 62.777, 106.286, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 19.1

Other elements in 4nx4:

The structure of Re-Refinement of Cap-1 Hiv-Ca Complex also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Re-Refinement of Cap-1 Hiv-Ca Complex (pdb code 4nx4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Re-Refinement of Cap-1 Hiv-Ca Complex, PDB code: 4nx4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4nx4

Go back to Zinc Binding Sites List in 4nx4
Zinc binding site 1 out of 2 in the Re-Refinement of Cap-1 Hiv-Ca Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Re-Refinement of Cap-1 Hiv-Ca Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn202

b:18.3
occ:1.00
O C:HOH385 2.0 19.5 1.0
ND1 C:HIS87 2.1 18.8 1.0
CE1 C:HIS87 3.0 20.9 1.0
HE1 C:HIS87 3.1 25.0 1.0
CG C:HIS87 3.1 18.4 1.0
HB2 C:HIS87 3.3 20.2 1.0
HB3 C:HIS87 3.5 20.2 1.0
CB C:HIS87 3.5 16.8 1.0
O C:HOH380 3.7 42.1 1.0
HG12 C:ILE91 4.0 41.0 1.0
O C:GLY89 4.0 22.8 1.0
NE2 C:HIS87 4.1 21.7 1.0
O C:HOH362 4.2 39.3 1.0
CD2 C:HIS87 4.2 20.1 1.0
HG13 C:ILE91 4.3 41.0 1.0
HA C:ILE91 4.3 35.1 1.0
CG1 C:ILE91 4.6 34.2 1.0
HA C:PRO90 4.8 27.8 1.0
N C:ILE91 5.0 26.6 1.0
O C:HOH366 5.0 26.9 1.0

Zinc binding site 2 out of 2 in 4nx4

Go back to Zinc Binding Sites List in 4nx4
Zinc binding site 2 out of 2 in the Re-Refinement of Cap-1 Hiv-Ca Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Re-Refinement of Cap-1 Hiv-Ca Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn203

b:41.7
occ:0.62
NE2 C:HIS120 2.0 26.5 0.4
NE2 C:HIS120 2.0 36.8 0.6
HE1 C:HIS120 2.6 32.2 0.4
CE1 C:HIS120 2.6 26.8 0.4
CE1 C:HIS120 2.8 35.0 0.6
HE1 C:HIS120 2.9 42.0 0.6
CD2 C:HIS120 3.2 34.5 0.6
O C:HOH387 3.2 32.3 1.0
CD2 C:HIS120 3.2 26.1 0.4
HD2 C:HIS120 3.4 41.5 0.6
HE2 C:MET96 3.5 37.6 0.5
HD2 C:HIS120 3.6 31.3 0.4
ND1 C:HIS120 3.8 26.7 0.4
ND1 C:HIS120 4.0 32.2 0.6
CG C:HIS120 4.1 26.1 0.4
CG C:HIS120 4.2 31.3 0.6
CE C:MET96 4.3 31.4 0.5
HD11 C:ILE124 4.4 31.0 1.0
OE1 C:GLN95 4.4 37.2 1.0
HE3 C:MET96 4.4 37.6 0.5
HE1 C:MET96 4.4 37.6 0.5
O C:HOH398 4.5 63.0 1.0

Reference:

P.T.Lang, J.M.Holton, J.S.Fraser, T.Alber. Protein Structural Ensembles Are Revealed By Redefining X-Ray Electron Density Noise. Proc.Natl.Acad.Sci.Usa V. 111 237 2014.
ISSN: ISSN 0027-8424
PubMed: 24363322
DOI: 10.1073/PNAS.1302823110
Page generated: Sun Oct 27 03:24:45 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy