Zinc in PDB 4mkg: Crystal Structure of A Stable Adenylate Kinase Variant AKV8

All present enzymatic activity of Crystal Structure of A Stable Adenylate Kinase Variant AKV8:
2.7.4.3;

The structure of Crystal Structure of A Stable Adenylate Kinase Variant AKV8, PDB code: 4mkg was solved by S.Moon, D.Jung, E.Bae, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.08 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.620, 61.320, 87.990, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 20.1

The structure of Crystal Structure of A Stable Adenylate Kinase Variant AKV8 also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Crystal Structure of A Stable Adenylate Kinase Variant AKV8 (pdb code 4mkg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Stable Adenylate Kinase Variant AKV8, PDB code: 4mkg:

Zinc binding site 1 out of 1 in the Crystal Structure of A Stable Adenylate Kinase Variant AKV8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Stable Adenylate Kinase Variant AKV8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:23.5 occ:1.00 OD2 A:ASP153 2.1 25.4 1.0 SG A:CYS133 2.3 21.4 1.0 SG A:CYS150 2.4 21.7 1.0 SG A:CYS130 2.4 23.8 1.0 CG A:ASP153 2.7 28.9 1.0 OD1 A:ASP153 2.9 28.6 1.0 CB A:CYS130 3.1 21.2 1.0 CB A:CYS150 3.3 21.3 1.0 CB A:CYS133 3.3 23.3 1.0 N A:CYS133 3.7 24.9 1.0 CA A:CYS133 4.0 23.8 1.0 CG2 A:THR135 4.2 21.2 1.0 CB A:ASP153 4.2 31.4 1.0 O A:HOH537 4.2 34.0 1.0 CB A:LYS152 4.5 27.9 1.0 CB A:VAL132 4.5 29.7 1.0 N A:ASP153 4.5 30.2 1.0 CA A:CYS130 4.6 19.9 1.0 CA A:CYS150 4.7 22.3 1.0 C A:VAL132 4.7 26.9 1.0 C A:CYS133 4.7 22.7 1.0 N A:GLY134 4.9 22.9 1.0 CE A:LYS152 4.9 34.6 1.0 CA A:ASP153 4.9 32.2 1.0 CA A:VAL132 4.9 28.3 1.0

S.Moon, D.Jung, G.N.Phillips, E.Bae. An Integrated Approach For Thermal Stabilization of A Mesophilic Adenylate Kinase. Proteins 2014.
ISSN: ESSN 1097-0134
PubMed: 24615904
DOI: 10.1002/PROT.24549