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Zinc in PDB 4lzv: Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride

Protein crystallography data

The structure of Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride, PDB code: 4lzv was solved by M.Oelker, G.Zocher, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.89 / 2.44
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.820, 89.820, 40.750, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride (pdb code 4lzv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride, PDB code: 4lzv:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 4lzv

Go back to Zinc Binding Sites List in 4lzv
Zinc binding site 1 out of 3 in the Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:69.1
occ:0.70
OE1 A:GLU51 2.0 69.8 1.0
CD A:GLU51 2.5 64.2 1.0
OE2 A:GLU51 2.6 64.1 1.0
CG A:GLU51 3.8 63.0 1.0
CD A:PRO50 4.4 54.7 1.0
CG A:PRO50 4.8 58.0 1.0
CB A:THR49 4.9 52.2 1.0
CB A:GLU51 5.0 58.0 1.0
N A:GLU51 5.0 55.7 1.0

Zinc binding site 2 out of 3 in 4lzv

Go back to Zinc Binding Sites List in 4lzv
Zinc binding site 2 out of 3 in the Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:54.7
occ:1.00
OE1 A:GLU74 2.0 57.0 1.0
OD2 A:ASP53 2.0 54.0 1.0
CD A:GLU74 2.8 54.5 1.0
CG A:ASP53 2.9 49.9 1.0
OE2 A:GLU74 2.9 57.5 1.0
OD1 A:ASP53 3.1 51.3 1.0
O A:HOH309 3.9 46.1 1.0
CB A:ASP53 4.3 47.5 1.0
CG A:GLU74 4.3 52.9 1.0
CB A:GLU74 4.8 51.3 1.0
CB A:GLU51 4.9 58.0 1.0
CA A:GLU74 4.9 48.3 1.0

Zinc binding site 3 out of 3 in 4lzv

Go back to Zinc Binding Sites List in 4lzv
Zinc binding site 3 out of 3 in the Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Bovine Beta-Lactoglobulin Crystallized in the Presence of 20 Mm Zinc Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:67.2
occ:0.75
NE2 A:HIS146 2.1 68.5 1.0
CE1 A:HIS146 3.0 65.9 1.0
CD2 A:HIS146 3.1 61.2 1.0
ND1 A:HIS146 4.1 63.2 1.0
CG A:HIS146 4.2 60.3 1.0
O A:PRO144 4.7 56.9 1.0
CB A:PRO144 4.8 64.3 1.0
O A:SER27 4.9 54.7 1.0

Reference:

A.Sauter, M.Oelker, G.Zocher, F.Zhang, T.Stehle, F.Schreiber. Non-Classical Pathways of Protein Crystallization in the Presence of Multivalent Metal Ions To Be Published.
Page generated: Sun Oct 27 02:11:12 2024

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