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Zinc in PDB 4lf7: Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus

Protein crystallography data

The structure of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus, PDB code: 4lf7 was solved by H.Demirci, R.Belardinelli, J.Carr, F.Murphy Iv, G.Jogl, A.E.Dahlberg, S.T.Gregory, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.62 / 3.15
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 402.445, 402.445, 176.924, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.5

Other elements in 4lf7:

The structure of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus also contains other interesting chemical elements:

Magnesium (Mg) 202 atoms
Potassium (K) 20 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus (pdb code 4lf7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus, PDB code: 4lf7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4lf7

Go back to Zinc Binding Sites List in 4lf7
Zinc binding site 1 out of 2 in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn301

b:99.0
occ:1.00
SG D:CYS31 2.3 0.4 1.0
SG D:CYS26 2.3 0.1 1.0
SG D:CYS9 2.4 93.6 1.0
SG D:CYS12 2.4 97.6 1.0
CB D:CYS12 3.7 0.9 1.0
O D:CYS31 3.8 0.2 1.0
CB D:CYS26 3.8 0.9 1.0
CB D:CYS31 3.9 0.9 1.0
CB D:CYS9 3.9 87.1 1.0
CA D:CYS26 4.4 0.6 1.0
CA D:CYS9 4.4 0.6 1.0
CA D:CYS31 4.4 0.8 1.0
C D:CYS31 4.5 0.7 1.0
O D:LEU19 4.6 0.2 1.0

Zinc binding site 2 out of 2 in 4lf7

Go back to Zinc Binding Sites List in 4lf7
Zinc binding site 2 out of 2 in the Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn101

b:0.6
occ:1.00
SG N:CYS27 2.3 82.8 1.0
SG N:CYS43 2.3 93.3 1.0
SG N:CYS24 2.3 0.6 1.0
SG N:CYS40 2.3 0.6 1.0
CB N:CYS43 3.1 82.2 1.0
CB N:CYS24 3.2 0.8 1.0
CB N:CYS40 3.3 92.5 1.0
CB N:CYS27 3.3 0.1 1.0
N N:CYS27 3.8 0.5 1.0
N N:CYS40 3.8 92.3 1.0
N N:CYS43 4.0 79.2 1.0
CA N:CYS40 4.1 92.5 1.0
CA N:CYS27 4.1 0.5 1.0
CA N:CYS43 4.2 83.8 1.0
CB N:ARG26 4.6 97.3 1.0
CB N:ARG29 4.6 86.1 1.0
C N:CYS40 4.7 98.2 1.0
CA N:CYS24 4.7 0.3 1.0
N N:GLY28 4.8 0.9 1.0
C N:CYS27 4.8 0.2 1.0
O N:CYS40 4.8 0.6 1.0
C N:ARG26 4.9 0.9 1.0
N N:ARG29 4.9 0.2 1.0
C N:LEU39 5.0 88.3 1.0

Reference:

H.Demirci, R.Belardinelli, J.Carr, F.Murphy Iv, G.Jogl, A.E.Dahlberg, S.T.Gregory. Crystal Structure of 30S Ribosomal Subunit From Thermus Thermophilus To Be Published 2013.
Page generated: Sun Oct 27 01:48:30 2024

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