Zinc in PDB 4ium: Equine Arteritis Virus Papain-Like Protease 2 (PLP2) Covalently Bound to Ubiquitin

The structure of Equine Arteritis Virus Papain-Like Protease 2 (PLP2) Covalently Bound to Ubiquitin, PDB code: 4ium was solved by B.A.Bailey-Elkin, T.W.James, B.L.Mark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.02 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.320, 62.040, 84.220, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 17.8

The binding sites of Zinc atom in the Equine Arteritis Virus Papain-Like Protease 2 (PLP2) Covalently Bound to Ubiquitin (pdb code 4ium). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Equine Arteritis Virus Papain-Like Protease 2 (PLP2) Covalently Bound to Ubiquitin, PDB code: 4ium:

Zinc binding site 1 out of 1 in the Equine Arteritis Virus Papain-Like Protease 2 (PLP2) Covalently Bound to Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Equine Arteritis Virus Papain-Like Protease 2 (PLP2) Covalently Bound to Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:15.6 occ:1.00 SG A:CYS356 2.3 14.9 1.0 SG A:CYS354 2.3 11.6 1.0 SG A:CYS349 2.3 11.5 1.0 SG A:CYS319 2.4 12.7 1.0 HB2 A:CYS356 2.9 14.9 1.0 HB2 A:CYS354 3.1 14.2 1.0 CB A:CYS354 3.1 11.8 1.0 HB3 A:CYS349 3.1 12.0 1.0 HB2 A:CYS319 3.1 13.0 1.0 HA A:CYS349 3.2 11.6 1.0 CB A:CYS356 3.2 12.5 1.0 HB3 A:CYS354 3.2 14.2 1.0 CB A:CYS349 3.2 10.0 1.0 CB A:CYS319 3.4 10.8 1.0 H A:CYS356 3.7 15.1 1.0 CA A:CYS349 3.7 9.7 1.0 HB3 A:CYS356 3.8 14.9 1.0 HD2 A:PRO320 3.8 17.6 1.0 HA A:CYS319 3.9 13.3 1.0 HB2 A:CYS349 4.1 12.0 1.0 HA A:CYS344 4.1 13.0 1.0 HB3 A:CYS319 4.1 13.0 1.0 H A:LEU345 4.1 13.6 1.0 CA A:CYS319 4.2 11.1 1.0 HB2 A:ASN321 4.3 16.1 1.0 H A:ASN321 4.3 13.6 1.0 HG A:LEU345 4.3 20.0 1.0 N A:CYS356 4.3 12.6 1.0 CA A:CYS356 4.4 14.2 1.0 HG A:CYS344 4.4 16.1 1.0 N A:CYS349 4.5 10.6 1.0 O A:HOH649 4.6 23.1 1.0 CA A:CYS354 4.6 12.7 1.0 HD21 A:ASN321 4.6 22.0 1.0 H A:CYS349 4.6 12.8 1.0 HB3 A:CYS344 4.6 13.3 1.0 CD A:PRO320 4.7 14.7 1.0 H A:CYS354 4.7 15.0 1.0 HD12 A:LEU345 4.7 24.4 1.0 HA A:CYS356 4.8 17.0 1.0 C A:CYS319 4.8 11.0 1.0 HB2 A:LEU345 4.9 16.2 1.0 N A:PRO320 4.9 12.0 1.0 N A:LEU345 4.9 11.3 1.0 HD3 A:PRO320 5.0 17.6 1.0 C A:CYS349 5.0 8.9 1.0 H A:ASN355 5.0 17.4 1.0 HG A:SER348 5.0 15.0 0.4 CA A:CYS344 5.0 10.8 1.0

P.B.Van Kasteren, B.A.Bailey-Elkin, T.W.James, D.K.Ninaber, C.Beugeling, M.Khajehpour, E.J.Snijder, B.L.Mark, M.Kikkert. Deubiquitinase Function of Arterivirus Papain-Like Protease 2 Suppresses the Innate Immune Response in Infected Host Cells. Proc.Natl.Acad.Sci.Usa V. 110 E838 2013.
ISSN: ISSN 0027-8424
PubMed: 23401522
DOI: 10.1073/PNAS.1218464110