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Zinc in PDB 4hi8: Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800

Enzymatic activity of Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800

All present enzymatic activity of Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800:
2.7.11.1;

Protein crystallography data

The structure of Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800, PDB code: 4hi8 was solved by A.L.Stiegler, J.Jakoncic, V.Stojanoff, B.P.Chiswell, D.A.Calderwood, T.J.Boggon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.79 / 1.20
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 37.093, 41.859, 46.983, 79.87, 68.82, 85.77
R / Rfree (%) 14.4 / 16.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800 (pdb code 4hi8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800, PDB code: 4hi8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4hi8

Go back to Zinc Binding Sites List in 4hi8
Zinc binding site 1 out of 2 in the Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:17.9
occ:1.00
 ND1 B:HIS32 2.1 20.2 1.0
SG B:CYS35 2.3 16.3 1.0
SG B:CYS13 2.3 20.6 1.0
SG B:CYS10 2.4 17.2 1.0
HB3 B:CYS10 2.9 23.3 1.0
CE1 B:HIS32 3.0 22.3 1.0
HB2 B:HIS32 3.0 22.8 1.0
CB B:CYS10 3.0 19.4 1.0
HB2 B:CYS10 3.1 23.3 1.0
HB3 B:CYS13 3.1 26.2 1.0
HE1 B:HIS32 3.1 26.7 1.0
HB2 B:CYS35 3.2 19.8 1.0
CG B:HIS32 3.2 20.1 1.0
H B:HIS32 3.2 21.4 1.0
H B:CYS13 3.2 24.7 1.0
CB B:CYS35 3.2 16.5 1.0
CB B:CYS13 3.3 21.8 1.0
HB3 B:CYS35 3.4 19.8 1.0
CB B:HIS32 3.6 19.0 1.0
N B:CYS13 3.9 20.6 1.0
HB3 B:ARG12 3.9 20.8 1.0
N B:HIS32 4.0 17.9 1.0
HB2 B:CYS13 4.1 26.2 1.0
CA B:CYS13 4.1 22.0 1.0
NE2 B:HIS32 4.2 22.8 1.0
H B:GLY15 4.2 34.1 1.0
CD2 B:HIS32 4.3 21.8 1.0
HB3 B:HIS32 4.3 22.8 1.0
HE B:ARG12 4.4 17.8 1.0
CA B:HIS32 4.4 18.2 1.0
CA B:CYS10 4.5 21.2 1.0
HH21 B:ARG12 4.5 18.1 1.0
H B:LYS14 4.6 30.6 1.0
HG2 B:GLN34 4.6 28.3 1.0
CA B:CYS35 4.6 16.5 1.0
H B:ARG12 4.6 24.9 1.0
HA B:TYR31 4.7 17.9 1.0
C B:CYS13 4.8 24.8 1.0
CB B:ARG12 4.9 17.4 1.0
N B:LYS14 4.9 25.5 1.0
HA B:CYS10 4.9 25.5 1.0
HE2 B:HIS32 4.9 27.4 1.0
HA B:CYS35 4.9 19.8 1.0
NE B:ARG12 4.9 14.8 1.0
HA B:CYS13 5.0 26.4 1.0
H B:CYS35 5.0 19.8 1.0
N B:GLY15 5.0 28.4 1.0

Zinc binding site 2 out of 2 in 4hi8

Go back to Zinc Binding Sites List in 4hi8
Zinc binding site 2 out of 2 in the Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn102

b:8.4
occ:1.00
 OD2 B:ASP62 2.0 8.3 1.0
SG B:CYS41 2.3 8.3 1.0
SG B:CYS59 2.3 11.4 1.0
SG B:CYS38 2.3 8.5 1.0
HB2 B:ASP62 3.0 9.2 1.0
HB3 B:CYS38 3.0 11.3 1.0
CG B:ASP62 3.0 7.8 1.0
CB B:CYS38 3.1 9.4 1.0
HB3 B:CYS41 3.1 9.7 1.0
H B:CYS41 3.1 8.8 1.0
HB2 B:CYS38 3.1 11.3 1.0
H B:CYS59 3.2 13.4 1.0
CB B:CYS41 3.3 8.1 1.0
HB3 B:CYS59 3.4 14.2 1.0
CB B:ASP62 3.5 7.7 1.0
HB3 B:GLN40 3.5 8.8 1.0
CB B:CYS59 3.6 11.8 1.0
N B:CYS41 3.7 7.3 1.0
H B:ASP62 3.9 10.0 1.0
N B:CYS59 4.0 11.2 1.0
HB3 B:ASP62 4.0 9.2 1.0
CA B:CYS41 4.1 7.8 1.0
HB2 B:CYS41 4.1 9.7 1.0
OD1 B:ASP62 4.1 8.6 1.0
H B:GLN40 4.3 8.0 1.0
HB2 B:CYS59 4.3 14.2 1.0
CA B:CYS59 4.3 11.9 1.0
CB B:GLN40 4.5 7.3 1.0
HE2 A:HIS99 4.5 9.5 1.0
O B:HOH219 4.5 19.1 1.0
N B:ASP62 4.5 8.3 1.0
CA B:CYS38 4.6 9.9 1.0
O B:HOH220 4.6 21.2 1.0
HB3 B:HIS61 4.6 10.7 1.0
CA B:ASP62 4.7 7.8 1.0
C B:GLN40 4.7 7.2 1.0
H B:GLN43 4.7 13.3 0.5
H B:GLN43 4.7 12.8 0.5
HA B:TYR58 4.7 14.3 1.0
H B:PHE42 4.8 9.2 1.0
HA B:CYS41 4.8 9.3 1.0
HD2 B:HIS61 4.8 11.6 1.0
NE2 A:HIS99 4.8 7.9 1.0
HE1 A:HIS99 4.8 9.6 1.0
HB2 B:GLN43 4.9 14.1 0.5
N B:GLN40 4.9 6.7 1.0
HB2 B:GLN40 4.9 8.8 1.0
CA B:GLN40 4.9 7.1 1.0
HA B:CYS38 4.9 11.9 1.0
HB3 B:TYR58 4.9 14.0 1.0
C B:CYS41 5.0 8.0 1.0
HD1 B:TYR58 5.0 12.4 1.0
C B:CYS59 5.0 11.7 1.0

Reference:

A.L.Stiegler, J.Jakoncic, V.Stojanoff, B.P.Chiswell, D.A.Calderwood, T.J.Boggon. Structure of Integrin-Linked Kinase Ankyrin Repeat Domain in Complex with PINCH1 LIM1 Domain Collected at High Energy, Wavelength 0.32800 To Be Published.
Page generated: Sun Oct 27 00:05:53 2024

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