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Zinc in PDB 4f4v: Human Insulin

Protein crystallography data

The structure of Human Insulin, PDB code: 4f4v was solved by M.P.Favero-Retto, L.C.Palmieri, L.M.T.R.Lima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.43 / 1.64
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 81.970, 81.970, 33.690, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 26.4

Other elements in 4f4v:

The structure of Human Insulin also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Insulin (pdb code 4f4v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Insulin, PDB code: 4f4v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4f4v

Go back to Zinc Binding Sites List in 4f4v
Zinc binding site 1 out of 2 in the Human Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Insulin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:17.4
occ:0.33
NE2 B:HIS10 2.0 13.7 1.0
CE1 B:HIS10 2.9 14.8 1.0
CL B:CL102 2.9 45.3 0.3
CD2 B:HIS10 3.0 13.5 1.0
ND1 B:HIS10 4.0 14.2 1.0
CG B:HIS10 4.1 14.3 1.0
O D:HOH228 4.6 18.3 0.3
O B:HOH206 4.9 28.5 1.0

Zinc binding site 2 out of 2 in 4f4v

Go back to Zinc Binding Sites List in 4f4v
Zinc binding site 2 out of 2 in the Human Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Insulin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:16.3
occ:0.33
NE2 D:HIS10 2.1 13.5 1.0
CL D:CL102 2.7 40.4 0.3
CE1 D:HIS10 3.1 15.9 1.0
CD2 D:HIS10 3.1 9.9 1.0
O D:HOH227 3.7 35.1 1.0
O D:HOH216 3.8 34.0 1.0
ND1 D:HIS10 4.2 12.1 1.0
CG D:HIS10 4.3 14.9 1.0
O D:HOH202 4.8 15.7 1.0

Reference:

M.P.Favero-Retto, L.C.Palmieri, T.A.Souza, F.C.Almeida, L.M.Lima. Structural Meta-Analysis of Regular Human Insulin in Pharmaceutical Formulations. Eur J Pharm Biopharm V. 85 1112 2013.
PubMed: 23692694
DOI: 10.1016/J.EJPB.2013.05.005
Page generated: Sat Oct 26 22:16:17 2024

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