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Zinc in PDB 4f4t: Human Insulin

Protein crystallography data

The structure of Human Insulin, PDB code: 4f4t was solved by M.P.Favero-Retto, L.C.Palmieri, L.M.T.R.Lima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.44 / 1.64
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 81.860, 81.860, 33.750, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 21.4

Other elements in 4f4t:

The structure of Human Insulin also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Insulin (pdb code 4f4t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Insulin, PDB code: 4f4t:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4f4t

Go back to Zinc Binding Sites List in 4f4t
Zinc binding site 1 out of 2 in the Human Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Insulin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:10.1
occ:0.33
NE2 B:HIS10 2.0 9.4 1.0
CE1 B:HIS10 2.9 11.7 1.0
CL B:CL102 3.0 26.5 0.3
CD2 B:HIS10 3.0 8.8 1.0
ND1 B:HIS10 4.1 11.2 1.0
CG B:HIS10 4.1 8.8 1.0
O D:HOH236 4.5 19.2 0.3
O B:HOH205 5.0 17.2 1.0

Zinc binding site 2 out of 2 in 4f4t

Go back to Zinc Binding Sites List in 4f4t
Zinc binding site 2 out of 2 in the Human Insulin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Insulin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:8.8
occ:0.33
NE2 D:HIS10 2.1 7.8 1.0
CL D:CL102 2.3 29.0 0.3
CE1 D:HIS10 2.9 10.0 1.0
CD2 D:HIS10 3.1 6.8 1.0
O D:HOH220 3.7 26.1 1.0
O D:HOH234 4.0 22.2 1.0
ND1 D:HIS10 4.1 10.1 1.0
CG D:HIS10 4.2 8.0 1.0
O D:HOH204 4.3 20.7 1.0

Reference:

M.P.Favero-Retto, L.C.Palmieri, T.A.Souza, F.C.Almeida, L.M.Lima. Structural Meta-Analysis of Regular Human Insulin in Pharmaceutical Formulations. Eur J Pharm Biopharm V. 85 1112 2013.
PubMed: 23692694
DOI: 10.1016/J.EJPB.2013.05.005
Page generated: Sat Oct 26 22:16:17 2024

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