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Zinc in PDB 4ehc: Crystal Structure of the C-Terminal Domain of RV0977 of Mycobacterium Tuberculosis

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Domain of RV0977 of Mycobacterium Tuberculosis, PDB code: 4ehc was solved by D.V.Barathy, K.Suguna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.73 / 1.98
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.110, 66.160, 69.620, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 21.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the C-Terminal Domain of RV0977 of Mycobacterium Tuberculosis (pdb code 4ehc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the C-Terminal Domain of RV0977 of Mycobacterium Tuberculosis, PDB code: 4ehc:

Zinc binding site 1 out of 1 in 4ehc

Go back to Zinc Binding Sites List in 4ehc
Zinc binding site 1 out of 1 in the Crystal Structure of the C-Terminal Domain of RV0977 of Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the C-Terminal Domain of RV0977 of Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:7.0
occ:1.00
NE2 A:HIS-14 1.9 8.2 1.0
OD1 A:ASP36 1.9 9.5 1.0
OD1 A:ASP189 2.0 6.2 1.0
NE2 A:HIS-16 2.0 9.6 1.0
OD2 A:ASP189 2.6 8.4 1.0
CG A:ASP189 2.6 7.3 1.0
CG A:ASP36 2.9 11.0 1.0
CE1 A:HIS-14 2.9 10.1 1.0
CE1 A:HIS-16 3.0 13.9 1.0
CD2 A:HIS-14 3.0 8.4 1.0
CD2 A:HIS-16 3.0 7.5 1.0
OD2 A:ASP36 3.1 15.9 1.0
CA A:GLY38 3.9 10.1 1.0
CA A:GLY191 3.9 6.6 1.0
N A:GLY191 4.0 7.0 1.0
ND1 A:HIS-14 4.0 9.2 1.0
N A:GLY38 4.1 9.6 1.0
C A:GLY191 4.1 6.3 1.0
CB A:ASP189 4.1 7.8 1.0
CG A:HIS-14 4.1 10.8 1.0
ND1 A:HIS-16 4.1 10.6 1.0
CG A:HIS-16 4.2 8.9 1.0
N A:GLY192 4.3 7.2 1.0
CB A:ASP36 4.3 7.9 1.0
C A:GLY38 4.5 11.2 1.0
O A:GLY191 4.6 7.2 1.0
CA A:ASP189 4.7 7.5 1.0
N A:SER39 4.8 12.2 1.0
CA A:ASP36 4.8 7.3 1.0
C A:ASP189 4.9 7.4 1.0
OH A:TYR64 4.9 21.5 1.0
CA A:GLY192 4.9 6.6 1.0

Reference:

D.V.Barathy, K.Suguna. Crystal Structure of A Putative Aspartic Proteinase Domain of the Mycobacterium Tuberculosis Cell Surface Antigen PE_PGRS16 Febs Open Bio V. 3 256 2013.
ISSN: ESSN 2211-5463
PubMed: 23923105
DOI: 10.1016/J.FOB.2013.05.004
Page generated: Sat Oct 26 22:00:10 2024

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