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Zinc in PDB 4b87: Crystal Structure of Human Dna Cross-Link Repair 1A

Protein crystallography data

The structure of Crystal Structure of Human Dna Cross-Link Repair 1A, PDB code: 4b87 was solved by C.K.Allerston, G.Berridge, E.P.Carpenter, G.Kochan, T.Krojer, P.Mahajan, M.Vollmar, W.W.Yue, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.23 / 2.16
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 83.400, 83.400, 257.841, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 21.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Dna Cross-Link Repair 1A (pdb code 4b87). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Dna Cross-Link Repair 1A, PDB code: 4b87:

Zinc binding site 1 out of 1 in 4b87

Go back to Zinc Binding Sites List in 4b87
Zinc binding site 1 out of 1 in the Crystal Structure of Human Dna Cross-Link Repair 1A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Dna Cross-Link Repair 1A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2041

b:37.5
occ:1.00
ND1 A:HIS734 2.1 34.4 1.0
NE2 A:HIS732 2.1 35.8 1.0
OD2 A:ASP815 2.1 36.7 1.0
NE2 A:HIS793 2.2 34.4 1.0
CE1 A:HIS734 2.9 34.5 1.0
CE1 A:HIS793 3.0 33.6 1.0
CD2 A:HIS732 3.1 35.6 1.0
CE1 A:HIS732 3.1 33.3 1.0
CG A:HIS734 3.2 36.7 1.0
CG A:ASP815 3.2 38.4 1.0
CD2 A:HIS793 3.3 35.3 1.0
CB A:HIS734 3.6 34.3 1.0
CB A:ASP815 3.7 37.4 1.0
NE2 A:HIS734 4.1 34.8 1.0
ND1 A:HIS793 4.2 33.2 1.0
ND1 A:HIS732 4.2 38.5 1.0
CG A:HIS732 4.2 36.8 1.0
CD2 A:HIS734 4.2 35.6 1.0
OD1 A:ASP815 4.3 40.1 1.0
NE2 A:HIS737 4.3 45.2 1.0
CG A:HIS793 4.3 34.3 1.0
CE1 A:HIS994 4.5 40.0 1.0
CD2 A:HIS737 4.5 37.0 1.0
NE2 A:HIS994 4.6 37.2 1.0
O A:HOH3148 4.9 64.8 1.0
O A:HOH3035 5.0 37.7 1.0

Reference:

C.K.Allerston, G.Berridge, E.P.Carpenter, G.Kochan, T.Krojer, P.Mahajan, M.Vollmar, W.W.Yue, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, O.Gileadi. Crystal Structure of Human Dna Cross-Link Repair 1A To Be Published.
Page generated: Wed Aug 20 16:07:17 2025

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