Zinc in PDB 3zyo: Crystal Structure of the N-Terminal Leucine Rich Repeats and Immunoglobulin Domain of Netrin-G Ligand-3

The structure of Crystal Structure of the N-Terminal Leucine Rich Repeats and Immunoglobulin Domain of Netrin-G Ligand-3, PDB code: 3zyo was solved by E.Seiradake, C.H.Coles, P.V.Perestenko, K.Harlos, R.A.J.Mcilhinney, A.R.Aricescu, E.Y.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.60 / 3.10
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	131.330, 131.330, 174.870, 90.00, 90.00, 120.00
R / Rfree (%)	22.856 / 26.931

The binding sites of Zinc atom in the Crystal Structure of the N-Terminal Leucine Rich Repeats and Immunoglobulin Domain of Netrin-G Ligand-3 (pdb code 3zyo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the N-Terminal Leucine Rich Repeats and Immunoglobulin Domain of Netrin-G Ligand-3, PDB code: 3zyo:

Zinc binding site 1 out of 1 in the Crystal Structure of the N-Terminal Leucine Rich Repeats and Immunoglobulin Domain of Netrin-G Ligand-3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the N-Terminal Leucine Rich Repeats and Immunoglobulin Domain of Netrin-G Ligand-3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1455 b:89.3 occ:1.00 CE1 A:HIS343 3.2 86.8 1.0 N A:HIS312 3.3 69.9 1.0 N A:ARG341 3.6 74.8 1.0 O A:ARG341 3.9 75.3 1.0 CA A:HIS312 4.0 71.5 1.0 ND1 A:HIS343 4.1 86.2 1.0 CA A:ASN311 4.1 66.0 1.0 C A:ASN311 4.2 68.1 1.0 CB A:ARG341 4.2 79.3 1.0 O A:ASN313 4.2 68.5 1.0 NE2 A:HIS343 4.2 90.7 1.0 CA A:ARG341 4.3 76.0 1.0 N A:ASN313 4.3 67.3 1.0 CB A:ASN311 4.5 67.7 1.0 C A:ARG341 4.6 75.3 1.0 CA A:ALA340 4.6 72.7 1.0 C A:ALA340 4.6 73.0 1.0 CG A:ARG341 4.6 81.5 1.0 CD1 A:TRP315 4.7 63.7 1.0 C A:HIS312 4.7 69.7 1.0 O A:CYS339 4.8 80.1 1.0 CD2 A:HIS312 5.0 78.2 1.0

E.Seiradake, C.H.Coles, P.V.Perestenko, K.Harlos, R.A.J.Mcilhinney, A.R.Aricescu, E.Y.Jones. Structural Basis For Cell Surface Patterning Through Netring-Ngl Interactions. Embo J. V. 30 4479 2011.
ISSN: ISSN 0261-4189
PubMed: 21946559
DOI: 10.1038/EMBOJ.2011.346