Zinc in PDB 3ztg: Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6)

The binding sites of Zinc atom in the Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6) (pdb code 3ztg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6), PDB code: 3ztg:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1336 b:0.0 occ:1.00 SG A:CYS280 2.1 0.0 1.0 SG A:CYS262 2.1 0.0 1.0 SG A:CYS259 2.2 0.0 1.0 SG A:CYS283 2.4 0.0 1.0 HB3 A:CYS259 2.8 0.0 1.0 H A:CYS280 3.0 0.0 1.0 CB A:CYS259 3.0 0.0 1.0 H A:CYS262 3.0 0.0 1.0 HB2 A:CYS283 3.1 0.0 1.0 HB2 A:CYS280 3.1 0.0 1.0 HB2 A:CYS259 3.1 0.0 1.0 CB A:CYS280 3.2 0.0 1.0 HB A:ILE261 3.2 0.0 1.0 CB A:CYS283 3.3 0.0 1.0 CB A:CYS262 3.4 0.0 1.0 HB3 A:CYS262 3.5 0.0 1.0 HB3 A:CYS283 3.5 0.0 1.0 N A:CYS262 3.7 0.0 1.0 N A:CYS280 3.8 0.0 1.0 HB3 A:MET266 3.9 0.0 1.0 HB3 A:TYR279 4.0 0.0 1.0 HB3 A:CYS280 4.0 0.0 1.0 CA A:CYS280 4.2 0.0 1.0 CA A:CYS262 4.2 0.0 1.0 HG2 A:MET266 4.2 0.0 1.0 HB2 A:CYS262 4.2 0.0 1.0 CB A:ILE261 4.3 0.0 1.0 HD13 A:ILE261 4.4 0.0 1.0 CA A:CYS259 4.4 0.0 1.0 HG3 A:MET266 4.5 0.0 1.0 H A:ILE261 4.6 0.0 1.0 H A:CYS283 4.6 0.0 1.0 C A:ILE261 4.6 0.0 1.0 CA A:CYS283 4.7 0.0 1.0 CG A:MET266 4.7 0.0 1.0 H A:ASP264 4.7 0.0 1.0 O A:ASP264 4.8 0.0 1.0 CB A:MET266 4.8 0.0 1.0 HA A:CYS280 4.8 0.0 1.0 HA A:TYR279 4.8 0.0 1.0 CA A:ILE261 4.9 0.0 1.0 CB A:TYR279 4.9 0.0 1.0 C A:CYS259 4.9 0.0 1.0 HB2 A:TYR279 4.9 0.0 1.0 N A:ILE261 4.9 0.0 1.0 HA A:CYS259 4.9 0.0 1.0 C A:TYR279 5.0 0.0 1.0

Zinc binding site 2 out of 4 in the Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1337 b:0.0 occ:1.00 SG A:CYS274 2.0 0.0 1.0 SG A:CYS296 2.2 0.0 1.0 SG A:CYS299 2.2 0.0 1.0 SG A:CYS275 2.5 0.0 1.0 HB3 A:CYS275 2.8 0.0 1.0 HG23 A:THR298 2.9 0.0 1.0 HB2 A:CYS296 3.0 0.0 1.0 CB A:CYS296 3.0 0.0 1.0 HB3 A:CYS296 3.1 0.0 1.0 CB A:CYS275 3.2 0.0 1.0 HB2 A:GLN301 3.3 0.0 1.0 H A:CYS299 3.3 0.0 1.0 HG21 A:THR298 3.5 0.0 1.0 CG2 A:THR298 3.6 0.0 1.0 CB A:CYS299 3.6 0.0 1.0 HB3 A:CYS299 3.6 0.0 1.0 H A:CYS275 3.7 0.0 1.0 CB A:CYS274 3.7 0.0 1.0 HG22 A:THR298 3.7 0.0 1.0 N A:CYS275 3.7 0.0 1.0 HD11 A:ILE272 3.8 0.0 1.0 CG2 A:ILE272 3.9 0.0 1.0 HB2 A:CYS274 3.9 0.0 1.0 HB2 A:CYS275 4.1 0.0 1.0 HD12 A:ILE272 4.1 0.0 1.0 C A:CYS274 4.1 0.0 1.0 CA A:CYS275 4.1 0.0 1.0 N A:CYS299 4.1 0.0 1.0 H A:GLN301 4.1 0.0 1.0 HD21 A:ASN277 4.2 0.0 1.0 CD1 A:ILE272 4.3 0.0 1.0 HG3 A:GLN301 4.3 0.0 1.0 HB2 A:CYS299 4.3 0.0 1.0 CB A:GLN301 4.4 0.0 1.0 HB3 A:CYS274 4.4 0.0 1.0 CA A:CYS299 4.4 0.0 1.0 H A:GLY276 4.4 0.0 1.0 CA A:CYS274 4.4 0.0 1.0 CA A:CYS296 4.5 0.0 1.0 CG1 A:ILE272 4.5 0.0 1.0 H A:HIS300 4.6 0.0 1.0 HD2 A:PRO297 4.6 0.0 1.0 H A:CYS274 4.6 0.0 1.0 O A:CYS274 4.7 0.0 1.0 OH A:TYR279 4.7 0.0 1.0 CG A:GLN301 4.7 0.0 1.0 HA A:CYS275 4.8 0.0 1.0 HA A:CYS296 4.8 0.0 1.0 HB3 A:GLN301 4.8 0.0 1.0 H A:THR298 4.8 0.0 1.0 HG2 A:GLN301 4.8 0.0 1.0 CB A:ILE272 4.8 0.0 1.0 CB A:THR298 5.0 0.0 1.0 N A:GLN301 5.0 0.0 1.0 N A:CYS274 5.0 0.0 1.0

Zinc binding site 3 out of 4 in the Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1336 b:0.0 occ:1.00 SG B:CYS280 2.1 0.0 1.0 SG B:CYS262 2.1 0.0 1.0 SG B:CYS283 2.1 0.0 1.0 SG B:CYS259 2.5 0.0 1.0 HB2 B:CYS280 3.0 0.0 1.0 HB2 B:CYS283 3.0 0.0 1.0 HB3 B:CYS259 3.1 0.0 1.0 H B:CYS280 3.1 0.0 1.0 CB B:CYS283 3.1 0.0 1.0 H B:CYS262 3.1 0.0 1.0 CB B:CYS280 3.2 0.0 1.0 HB B:ILE261 3.2 0.0 1.0 CB B:CYS259 3.2 0.0 1.0 HB3 B:CYS283 3.3 0.0 1.0 HB2 B:CYS259 3.4 0.0 1.0 CB B:CYS262 3.5 0.0 1.0 HB3 B:CYS262 3.5 0.0 1.0 N B:CYS262 3.8 0.0 1.0 N B:CYS280 3.9 0.0 1.0 HB3 B:CYS280 3.9 0.0 1.0 HB3 B:MET266 4.0 0.0 1.0 CA B:CYS280 4.2 0.0 1.0 HB3 B:TYR279 4.2 0.0 1.0 HB2 B:CYS262 4.3 0.0 1.0 CA B:CYS262 4.3 0.0 1.0 CB B:ILE261 4.3 0.0 1.0 HD13 B:ILE261 4.3 0.0 1.0 H B:CYS283 4.5 0.0 1.0 CA B:CYS283 4.5 0.0 1.0 HG2 B:MET266 4.5 0.0 1.0 HG3 B:MET266 4.7 0.0 1.0 CA B:CYS259 4.7 0.0 1.0 C B:ILE261 4.7 0.0 1.0 H B:ILE261 4.8 0.0 1.0 HA B:CYS283 4.8 0.0 1.0 HA B:CYS280 4.9 0.0 1.0 N B:CYS283 4.9 0.0 1.0 CA B:ILE261 5.0 0.0 1.0 H B:ASP264 5.0 0.0 1.0 CG B:MET266 5.0 0.0 1.0 CB B:MET266 5.0 0.0 1.0

Zinc binding site 4 out of 4 in the Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1337 b:0.0 occ:1.00 SG B:CYS274 2.1 0.0 1.0 SG B:CYS296 2.1 0.0 1.0 SG B:CYS299 2.1 0.0 1.0 SG B:CYS275 2.5 0.0 1.0 HG23 B:THR298 2.8 0.0 1.0 HB3 B:CYS275 2.9 0.0 1.0 HB2 B:CYS296 3.0 0.0 1.0 CB B:CYS296 3.0 0.0 1.0 HB3 B:CYS296 3.1 0.0 1.0 CB B:CYS275 3.3 0.0 1.0 H B:CYS299 3.3 0.0 1.0 HB2 B:GLN301 3.5 0.0 1.0 CG2 B:THR298 3.5 0.0 1.0 HG21 B:THR298 3.5 0.0 1.0 CB B:CYS299 3.6 0.0 1.0 HG22 B:THR298 3.7 0.0 1.0 CB B:CYS274 3.7 0.0 1.0 HB3 B:CYS299 3.7 0.0 1.0 HD11 B:ILE272 3.7 0.0 1.0 H B:CYS275 3.8 0.0 1.0 N B:CYS275 3.8 0.0 1.0 CG2 B:ILE272 3.8 0.0 1.0 HB2 B:CYS274 3.9 0.0 1.0 C B:CYS274 4.1 0.0 1.0 HG3 B:GLN301 4.1 0.0 1.0 N B:CYS299 4.1 0.0 1.0 HB2 B:CYS275 4.1 0.0 1.0 CA B:CYS275 4.2 0.0 1.0 H B:GLN301 4.2 0.0 1.0 HD12 B:ILE272 4.2 0.0 1.0 HD21 B:ASN277 4.3 0.0 1.0 CD1 B:ILE272 4.3 0.0 1.0 HB2 B:CYS299 4.4 0.0 1.0 HB3 B:CYS274 4.4 0.0 1.0 CA B:CYS299 4.4 0.0 1.0 CA B:CYS274 4.4 0.0 1.0 CA B:CYS296 4.4 0.0 1.0 H B:GLY276 4.5 0.0 1.0 HD2 B:PRO297 4.5 0.0 1.0 CB B:GLN301 4.5 0.0 1.0 H B:HIS300 4.5 0.0 1.0 CG1 B:ILE272 4.6 0.0 1.0 OH B:TYR279 4.6 0.0 1.0 H B:CYS274 4.6 0.0 1.0 O B:CYS274 4.7 0.0 1.0 H B:THR298 4.7 0.0 1.0 CG B:GLN301 4.7 0.0 1.0 HA B:CYS296 4.7 0.0 1.0 HA B:CYS275 4.8 0.0 1.0 CB B:ILE272 4.8 0.0 1.0 CB B:THR298 4.9 0.0 1.0 HG2 B:GLN301 4.9 0.0 1.0 N B:CYS274 5.0 0.0 1.0 H B:ASN277 5.0 0.0 1.0

M.A.Kappo, E.Ab, F.Hassem, R.A.Atkinson, A.Faro, V.Muleya, T.Mulaudzi, J.O.Poole, J.M.Mckenzie, M.Chibi, J.C.Moolman-Smook, D.J.G.Rees, D.J.R.Pugh. Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (RBBP6) Suggests It Functions As A U-Box J.Biol.Chem. V. 287 7146 2012.
ISSN: ISSN 0021-9258
PubMed: 22130672
DOI: 10.1074/JBC.M110.217059