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Zinc in PDB 3un6: 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound

Protein crystallography data

The structure of 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound, PDB code: 3un6 was solved by G.Minasov, Z.Wawrzak, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, O.Kiryukhina, F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.99 / 2.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.080, 64.732, 45.468, 90.00, 91.50, 90.00
R / Rfree (%) 16.4 / 20.6

Zinc Binding Sites:

The binding sites of Zinc atom in the 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound (pdb code 3un6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound, PDB code: 3un6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3un6

Go back to Zinc Binding Sites List in 3un6
Zinc binding site 1 out of 2 in the 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn325

b:23.0
occ:1.00
ND1 A:HIS46 2.1 20.1 1.0
SG A:CYS221 2.3 19.8 1.0
O A:HOH330 2.4 17.7 1.0
SG A:CYS220 2.4 17.8 1.0
CE1 A:HIS46 3.0 26.5 1.0
CG A:HIS46 3.2 22.2 1.0
CB A:CYS221 3.4 16.9 1.0
CB A:CYS220 3.4 18.6 1.0
N A:CYS221 3.5 19.4 1.0
CB A:HIS46 3.6 20.9 1.0
CD2 A:LEU93 3.9 20.2 1.0
C A:CYS220 3.9 18.5 1.0
CA A:CYS221 4.0 19.1 1.0
NE2 A:HIS114 4.0 21.8 1.0
NE2 A:HIS46 4.1 23.7 1.0
CD2 A:HIS46 4.3 23.2 1.0
CA A:CYS220 4.3 20.0 1.0
CD1 A:ILE44 4.3 17.4 1.0
CE1 A:HIS149 4.3 26.2 1.0
CB A:ALA192 4.5 20.4 1.0
O A:CYS220 4.5 21.3 1.0
CE1 A:HIS114 4.6 26.2 1.0
NE2 A:HIS149 4.7 21.8 1.0
ZN A:ZN326 4.7 23.0 0.5
OD1 A:ASN118 4.8 19.1 1.0
O A:HOH350 4.8 26.6 1.0
O A:HOH331 4.8 18.5 1.0
CD2 A:HIS114 4.9 26.0 1.0

Zinc binding site 2 out of 2 in 3un6

Go back to Zinc Binding Sites List in 3un6
Zinc binding site 2 out of 2 in the 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn326

b:23.0
occ:0.50
O A:HOH330 2.3 17.7 1.0
CG2 A:VAL191 3.7 21.4 1.0
NE1 A:TRP75 3.7 19.4 1.0
N A:ALA192 3.8 20.2 1.0
CG A:PRO143 3.8 22.5 1.0
CB A:ALA192 3.8 20.4 1.0
CE1 A:HIS149 3.9 26.2 1.0
CZ2 A:TRP75 3.9 21.0 1.0
CD1 A:ILE44 4.0 17.4 1.0
CB A:PRO143 4.0 22.6 1.0
CG A:PRO174 4.1 25.1 1.0
NE2 A:HIS149 4.1 21.8 1.0
CE2 A:TRP75 4.2 21.9 1.0
CA A:ALA192 4.4 20.2 1.0
CG2 A:ILE44 4.5 21.1 1.0
CD2 A:LEU93 4.6 20.2 1.0
ZN A:ZN325 4.7 23.0 1.0
CA A:VAL191 4.7 19.5 1.0
C A:VAL191 4.7 19.9 1.0
ND1 A:HIS149 4.8 23.6 1.0
CB A:PRO174 4.8 26.5 1.0
CB A:VAL191 4.9 20.7 1.0
CD1 A:TRP75 5.0 25.3 1.0

Reference:

G.Minasov, Z.Wawrzak, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, O.Kiryukhina, F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.0 Angstrom Crystal Structure of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Zinc Bound. To Be Published.
Page generated: Sat Oct 26 17:24:22 2024

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