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Zinc in PDB 3tus: Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution

Protein crystallography data

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution, PDB code: 3tus was solved by P.K.Shukla, L.Gautam, A.Singh, S.Kaushik, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.26 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.431, 50.492, 65.404, 90.00, 107.32, 90.00
R / Rfree (%) 21.8 / 24.1

Other elements in 3tus:

The structure of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution (pdb code 3tus). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution, PDB code: 3tus:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3tus

Go back to Zinc Binding Sites List in 3tus
Zinc binding site 1 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn695

b:40.7
occ:1.00
OE2 A:GLU659 1.9 32.9 1.0
O A:HOH216 2.0 35.1 1.0
CD A:GLU659 2.6 31.5 1.0
OE1 A:GLU659 2.8 33.1 1.0
O A:GLY653 3.8 34.9 1.0
CG A:GLU659 4.1 30.0 1.0
O A:ARG654 4.4 32.1 1.0
CA A:PRO655 4.6 27.6 1.0
CB A:GLU659 4.8 29.3 1.0
N A:THR656 4.9 25.6 1.0
C A:ARG654 5.0 32.0 1.0

Zinc binding site 2 out of 2 in 3tus

Go back to Zinc Binding Sites List in 3tus
Zinc binding site 2 out of 2 in the Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta- Hydroxy Benzoic Acid at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn696

b:37.6
occ:1.00
NE2 A:HIS588 2.2 27.6 1.0
CD2 A:HIS588 3.0 26.6 1.0
CE1 A:HIS588 3.3 25.5 1.0
O A:HOH233 3.6 47.7 1.0
O A:HOH227 3.8 55.2 1.0
CG A:HIS588 4.2 26.3 1.0
ND1 A:HIS588 4.3 25.6 1.0
CG2 A:VAL591 4.6 27.5 1.0

Reference:

P.K.Shukla, L.Gautam, A.Singh, S.Kaushik, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with Meta-Hydroxy Benzoic Acid at 2.5 A Resolution To Be Published.
Page generated: Sat Oct 26 16:48:09 2024

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