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Zinc in PDB 3t8h: Thermolysin in Complex with UBTLN29

Enzymatic activity of Thermolysin in Complex with UBTLN29

All present enzymatic activity of Thermolysin in Complex with UBTLN29:
3.4.24.27;

Protein crystallography data

The structure of Thermolysin in Complex with UBTLN29, PDB code: 3t8h was solved by A.Biela, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.18 / 1.45
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.800, 92.800, 130.100, 90.00, 90.00, 120.00
R / Rfree (%) 12.3 / 15.3

Other elements in 3t8h:

The structure of Thermolysin in Complex with UBTLN29 also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Thermolysin in Complex with UBTLN29 (pdb code 3t8h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Thermolysin in Complex with UBTLN29, PDB code: 3t8h:

Zinc binding site 1 out of 1 in 3t8h

Go back to Zinc Binding Sites List in 3t8h
Zinc binding site 1 out of 1 in the Thermolysin in Complex with UBTLN29


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thermolysin in Complex with UBTLN29 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn326

b:7.9
occ:1.00
OE2 A:GLU166 2.0 9.2 1.0
O23 A:UBS317 2.0 7.4 1.0
NE2 A:HIS142 2.0 7.8 1.0
NE2 A:HIS146 2.0 7.9 1.0
CD A:GLU166 2.8 8.9 1.0
CE1 A:HIS146 2.9 8.1 1.0
OE1 A:GLU166 3.0 9.0 1.0
CD2 A:HIS142 3.0 7.4 1.0
P12 A:UBS317 3.0 7.5 1.0
CE1 A:HIS142 3.0 7.9 1.0
O22 A:UBS317 3.1 8.1 1.0
CD2 A:HIS146 3.2 8.0 1.0
OH A:TYR157 3.8 10.0 1.0
NE2 A:HIS231 4.0 8.6 1.0
N13 A:UBS317 4.0 7.5 1.0
ND1 A:HIS146 4.1 7.9 1.0
C14 A:UBS317 4.1 7.6 1.0
ND1 A:HIS142 4.1 7.5 1.0
CG A:HIS142 4.2 7.3 1.0
CG A:HIS146 4.2 7.2 1.0
CG A:GLU166 4.2 8.6 1.0
C11 A:UBS317 4.5 9.6 1.0
CD2 A:HIS231 4.5 8.8 1.0
CB A:SER169 4.6 7.2 1.0
C15 A:UBS317 4.6 9.3 1.0
N10 A:UBS317 4.6 11.9 0.6
C3 A:GOL323 4.6 13.6 1.0
O24 A:UBS317 4.6 9.2 1.0
N10 A:UBS317 4.7 12.8 0.5
OG A:SER169 4.8 7.3 1.0
O3 A:GOL323 4.8 9.9 1.0
CZ A:TYR157 4.8 8.9 1.0
OE1 A:GLU143 4.8 11.8 1.0
CA A:GLU166 4.9 7.5 1.0
CE1 A:TYR157 4.9 8.5 1.0

Reference:

A.Biela, N.Nasief, A.Heine, D.Hangauer, G.Klebe. Thermolysin Inhibition To Be Published.
Page generated: Sat Oct 26 16:23:55 2024

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