Zinc in PDB 3t3o: Molecular Basis For the Recognition and Cleavage of Rna (Cugg) By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J

The structure of Molecular Basis For the Recognition and Cleavage of Rna (Cugg) By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J, PDB code: 3t3o was solved by A.Dorleans, I.Li De La Sierra-Gallay, J.Piton, L.Zig, L.Gilet, H.Putzer, C.Condon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.76 / 2.50
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	99.350, 117.940, 229.390, 90.00, 90.00, 90.00
R / Rfree (%)	22.7 / 28.5

The binding sites of Zinc atom in the Molecular Basis For the Recognition and Cleavage of Rna (Cugg) By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J (pdb code 3t3o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Molecular Basis For the Recognition and Cleavage of Rna (Cugg) By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J, PDB code: 3t3o:

Zinc binding site 1 out of 1 in the Molecular Basis For the Recognition and Cleavage of Rna (Cugg) By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Molecular Basis For the Recognition and Cleavage of Rna (Cugg) By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn600 b:94.5 occ:1.00 OD2 A:ASP172 1.9 64.1 1.0 OD2 A:ASP79 2.5 66.6 1.0 NE2 A:HIS398 2.6 57.5 1.0 NE2 A:HIS80 2.7 53.3 1.0 CG A:ASP172 2.8 55.7 1.0 CD2 A:HIS80 2.9 53.5 1.0 O A:HOH570 3.0 38.7 1.0 OD1 A:ASP79 3.0 64.7 1.0 CG A:ASP79 3.1 63.0 1.0 OD1 A:ASP172 3.2 56.5 1.0 CE1 A:HIS398 3.3 57.2 1.0 CD2 A:HIS398 3.5 57.7 1.0 CM2 B:OMC901 3.6 0.6 1.0 NE2 A:HIS75 3.7 50.0 1.0 CE1 A:HIS80 4.0 53.0 1.0 CB A:ASP172 4.0 43.8 1.0 CE1 A:HIS75 4.1 50.0 1.0 ND2 A:ASN24 4.2 41.0 1.0 CG A:HIS80 4.2 52.2 1.0 ND1 A:HIS398 4.4 57.6 1.0 CG A:HIS398 4.5 55.9 1.0 NE2 A:HIS150 4.5 50.3 1.0 CE1 A:HIS376 4.6 48.2 1.0 CB A:ASP79 4.6 53.0 1.0 O A:ILE21 4.7 57.6 1.0 ND1 A:HIS80 4.8 53.9 1.0 CD2 A:HIS75 4.9 50.0 1.0 O A:ASP79 5.0 52.2 1.0 NE2 A:HIS376 5.0 48.8 1.0 O2' B:OMC901 5.0 0.4 1.0

A.Dorleans, I.Li De La Sierra-Gallay, J.Piton, L.Zig, L.Gilet, H.Putzer, C.Condon. Molecular Basis For the Recognition and Cleavage of Rna By the Bifunctional 5'-3' Exo/Endoribonuclease Rnase J. Structure V. 19 1252 2011.
ISSN: ISSN 0969-2126
PubMed: 21893286
DOI: 10.1016/J.STR.2011.06.018