Atomistry » Zinc » PDB 3ptq-3q7j » 3q2g
Atomistry »
  Zinc »
    PDB 3ptq-3q7j »
      3q2g »

Zinc in PDB 3q2g: ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors

Protein crystallography data

The structure of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors, PDB code: 3q2g was solved by S.Gerhardt, D.Hargreaves, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 114.71 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.309, 63.419, 114.912, 90.00, 89.88, 90.00
R / Rfree (%) 20.8 / 26.1

Other elements in 3q2g:

The structure of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Nickel (Ni) 14 atoms
Magnesium (Mg) 1 atom
Cadmium (Cd) 5 atoms
Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors (pdb code 3q2g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors, PDB code: 3q2g:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3q2g

Go back to Zinc Binding Sites List in 3q2g
Zinc binding site 1 out of 2 in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:27.7
occ:1.00
O27 A:QGF1 1.7 38.3 1.0
NE2 A:HIS153 2.1 27.0 1.0
NE2 A:HIS159 2.2 34.3 1.0
O29 A:QGF1 2.2 40.4 1.0
NE2 A:HIS149 2.3 29.3 1.0
N26 A:QGF1 2.7 39.8 1.0
C28 A:QGF1 2.8 39.6 1.0
CD2 A:HIS149 3.0 27.7 1.0
CD2 A:HIS153 3.1 25.5 1.0
CE1 A:HIS159 3.1 34.7 1.0
CE1 A:HIS153 3.2 27.6 1.0
CD2 A:HIS159 3.2 33.9 1.0
CE1 A:HIS149 3.4 28.2 1.0
C4 A:QGF1 4.1 40.9 1.0
C33 A:QGF1 4.2 42.2 1.0
C32 A:QGF1 4.2 41.5 1.0
C15 A:QGF1 4.2 42.4 1.0
C35 A:QGF1 4.2 40.8 1.0
CG A:HIS149 4.2 27.4 1.0
CG A:HIS153 4.2 26.4 1.0
ND1 A:HIS153 4.2 27.9 1.0
C11 A:QGF1 4.2 43.0 1.0
N31 A:QGF1 4.2 41.9 1.0
N36 A:QGF1 4.2 41.9 1.0
ND1 A:HIS159 4.2 33.8 1.0
C30 A:QGF1 4.3 41.8 1.0
N10 A:QGF1 4.3 41.5 1.0
CG A:HIS159 4.3 33.9 1.0
ND1 A:HIS149 4.4 27.1 1.0
OE2 A:GLU150 4.6 24.4 1.0
C3 A:QGF1 4.6 40.1 1.0
C6 A:QGF1 4.7 40.5 1.0
F34 A:QGF1 4.7 44.6 1.0
OE1 A:GLU150 4.8 26.1 1.0
CE A:MET178 4.8 27.0 1.0
C13 A:QGF1 4.9 46.7 1.0

Zinc binding site 2 out of 2 in 3q2g

Go back to Zinc Binding Sites List in 3q2g
Zinc binding site 2 out of 2 in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:25.3
occ:1.00
O27 B:QGF2 2.0 51.9 1.0
NE2 B:HIS149 2.1 31.6 1.0
NE2 B:HIS159 2.1 39.0 1.0
NE2 B:HIS153 2.3 35.7 1.0
O29 B:QGF2 2.4 50.1 1.0
CD2 B:HIS149 3.0 30.4 1.0
N26 B:QGF2 3.0 51.6 1.0
CE1 B:HIS159 3.0 39.3 1.0
C28 B:QGF2 3.1 51.4 1.0
CD2 B:HIS159 3.2 37.5 1.0
CE1 B:HIS149 3.2 32.5 1.0
CD2 B:HIS153 3.3 35.0 1.0
CE1 B:HIS153 3.3 36.1 1.0
C35 B:QGF2 4.0 55.5 1.0
C33 B:QGF2 4.1 54.9 1.0
C11 B:QGF2 4.1 51.7 1.0
ND1 B:HIS159 4.1 38.9 1.0
N36 B:QGF2 4.2 55.2 1.0
CG B:HIS149 4.2 29.9 1.0
C15 B:QGF2 4.2 52.6 1.0
ND1 B:HIS149 4.2 31.2 1.0
CG B:HIS159 4.3 39.1 1.0
N10 B:QGF2 4.3 51.3 1.0
C32 B:QGF2 4.3 54.7 1.0
C30 B:QGF2 4.3 54.1 1.0
C4 B:QGF2 4.4 51.2 1.0
N31 B:QGF2 4.4 55.3 1.0
ND1 B:HIS153 4.4 36.0 1.0
CG B:HIS153 4.4 34.5 1.0
F34 B:QGF2 4.6 54.1 1.0
OE1 B:GLU150 4.6 28.8 1.0
OE2 B:GLU150 4.8 27.8 1.0
CE B:MET178 4.8 33.4 1.0
C6 B:QGF2 4.9 50.3 1.0
C3 B:QGF2 4.9 51.9 1.0

Reference:

C.De Savi, A.Pape, J.G.Cumming, A.Ting, P.D.Smith, J.N.Burrows, M.Mills, C.Davies, S.Lamont, D.Milne, C.Cook, P.Moore, Y.Sawyer, S.Gerhardt. The Design and Synthesis of Novel N-Hydroxyformamide Inhibitors of Adam-TS4 For the Treatment of Osteoarthritis Bioorg.Med.Chem.Lett. V. 21 1376 2011.
ISSN: ISSN 0960-894X
PubMed: 21300546
DOI: 10.1016/J.BMCL.2011.01.036
Page generated: Sat Oct 26 11:52:33 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy