Atomistry » Zinc » PDB 3p4v-3phd » 3p7v
Atomistry »
  Zinc »
    PDB 3p4v-3phd »
      3p7v »

Zinc in PDB 3p7v: Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy)

Enzymatic activity of Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy)

All present enzymatic activity of Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy):
3.4.24.27;

Protein crystallography data

The structure of Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy), PDB code: 3p7v was solved by D.H.Juers, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.67 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.850, 93.850, 128.740, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 20.2

Other elements in 3p7v:

The structure of Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy) (pdb code 3p7v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy), PDB code: 3p7v:

Zinc binding site 1 out of 1 in 3p7v

Go back to Zinc Binding Sites List in 3p7v
Zinc binding site 1 out of 1 in the Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn321

b:15.8
occ:1.00
 O E:HOH359 1.8 18.7 1.0
OE2 E:GLU166 2.0 17.7 1.0
NE2 E:HIS142 2.0 13.3 1.0
NE2 E:HIS146 2.1 13.3 1.0
CD E:GLU166 2.6 19.5 1.0
OE1 E:GLU166 2.6 24.5 1.0
CE1 E:HIS142 3.0 12.9 1.0
CD2 E:HIS142 3.0 10.8 1.0
CE1 E:HIS146 3.0 13.2 1.0
CD2 E:HIS146 3.1 10.6 1.0
OE2 E:GLU143 3.7 28.1 1.0
ND1 E:HIS142 4.1 11.9 1.0
CG E:GLU166 4.1 16.4 1.0
CG E:HIS142 4.1 13.5 1.0
ND1 E:HIS146 4.2 10.8 1.0
OH E:TYR157 4.2 28.0 1.0
CG E:HIS146 4.2 10.9 1.0
O E:HOH558 4.3 44.4 1.0
CD E:GLU143 4.3 23.4 1.0
NE2 E:HIS231 4.5 27.7 1.0
OE1 E:GLU143 4.5 25.7 1.0
CB E:SER169 4.5 10.9 1.0
OG E:SER169 4.7 14.5 1.0
CA E:GLU166 4.8 11.8 1.0
O E:HOH347 4.9 21.5 1.0
CB E:GLU166 4.9 11.2 1.0
CD2 E:HIS231 5.0 24.6 1.0

Reference:

D.H.Juers, M.Weik. Radiation Damage Study of Thermolysin - 160K Structure C (4.8 Mgy) To Be Published.
Page generated: Sat Oct 26 11:21:17 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy