Atomistry » Zinc » PDB 3p4v-3phd » 3p7r
Atomistry »
  Zinc »
    PDB 3p4v-3phd »
      3p7r »

Zinc in PDB 3p7r: Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy)

Enzymatic activity of Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy)

All present enzymatic activity of Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy):
3.4.24.27;

Protein crystallography data

The structure of Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy), PDB code: 3p7r was solved by D.H.Juers, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.58 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.310, 93.310, 128.730, 90.00, 90.00, 120.00
R / Rfree (%) 14.4 / 20.2

Other elements in 3p7r:

The structure of Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy) (pdb code 3p7r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy), PDB code: 3p7r:

Zinc binding site 1 out of 1 in 3p7r

Go back to Zinc Binding Sites List in 3p7r
Zinc binding site 1 out of 1 in the Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn321

b:10.8
occ:1.00
O E:HOH361 1.7 14.4 1.0
OE2 E:GLU166 2.0 10.3 1.0
NE2 E:HIS142 2.0 9.5 1.0
NE2 E:HIS146 2.0 9.8 1.0
CD E:GLU166 2.7 15.6 1.0
OE1 E:GLU166 2.9 18.5 1.0
CE1 E:HIS146 2.9 8.6 1.0
CD2 E:HIS142 2.9 6.4 1.0
CE1 E:HIS142 3.0 9.4 1.0
CD2 E:HIS146 3.1 8.2 1.0
OE2 E:GLU143 3.9 23.1 1.0
OH E:TYR157 4.1 19.1 1.0
ND1 E:HIS146 4.1 8.7 1.0
CG E:HIS142 4.1 7.3 1.0
ND1 E:HIS142 4.1 7.5 1.0
CG E:GLU166 4.2 11.6 1.0
CG E:HIS146 4.2 7.8 1.0
O E:HOH570 4.3 32.6 1.0
NE2 E:HIS231 4.3 20.3 1.0
OE1 E:GLU143 4.4 21.3 1.0
CD E:GLU143 4.5 19.2 1.0
CB E:SER169 4.5 8.0 1.0
OG E:SER169 4.7 10.9 1.0
O E:HOH348 4.7 14.8 1.0
CA E:GLU166 4.8 9.0 1.0
CD2 E:HIS231 4.8 17.6 1.0
CB E:GLU166 5.0 8.8 1.0

Reference:

D.H.Juers, M.Weik. Radiation Damage Study of Thermolysin - 100K Structure C (4.9 Mgy) To Be Published.
Page generated: Sat Oct 26 11:20:31 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy