Zinc in PDB 3os0: Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution

The structure of Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution, PDB code: 3os0 was solved by G.N.Maertens, S.Hare, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.12 / 2.81
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	159.859, 159.859, 125.108, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 24.1

The structure of Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution (pdb code 3os0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution, PDB code: 3os0:

Zinc binding site 1 out of 1 in the Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pfv Strand Transfer Complex (Stc) at 2.81 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn393 b:52.9 occ:1.00 NE2 A:HIS62 1.9 49.4 1.0 ND1 A:HIS66 2.0 46.3 1.0 SG A:CYS96 2.2 51.4 1.0 SG A:CYS99 2.3 48.4 1.0 CE1 A:HIS62 2.8 49.6 1.0 CD2 A:HIS62 3.0 49.5 1.0 CE1 A:HIS66 3.0 46.4 1.0 CG A:HIS66 3.0 47.0 1.0 CB A:CYS96 3.3 54.0 1.0 CB A:HIS66 3.4 47.0 1.0 CB A:CYS99 3.5 49.1 1.0 CA A:HIS66 3.9 47.4 1.0 N A:CYS99 3.9 50.5 1.0 ND1 A:HIS62 4.0 50.1 1.0 CG A:HIS62 4.1 50.2 1.0 NE2 A:HIS66 4.1 45.9 1.0 CD2 A:HIS66 4.2 46.5 1.0 CA A:CYS99 4.2 49.4 1.0 O A:HIS66 4.4 47.8 1.0 C A:HIS66 4.5 47.2 1.0 CA A:CYS96 4.7 54.3 1.0 OD1 A:ASN63 4.8 52.4 1.0 C A:GLN98 4.9 51.4 1.0 CB A:GLN98 4.9 52.4 1.0

G.N.Maertens, S.Hare, P.Cherepanov. The Mechanism of Retroviral Integration From X-Ray Structures of Its Key Intermediates Nature V. 468 326 2010.
ISSN: ISSN 0028-0836
PubMed: 21068843
DOI: 10.1038/NATURE09517