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Zinc in PDB 3oke: Crystal Structure of S25-39 in Complex with Ko

Protein crystallography data

The structure of Crystal Structure of S25-39 in Complex with Ko, PDB code: 3oke was solved by R.J.Blackler, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.36 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.959, 81.245, 127.710, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 29

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of S25-39 in Complex with Ko (pdb code 3oke). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of S25-39 in Complex with Ko, PDB code: 3oke:

Zinc binding site 1 out of 1 in 3oke

Go back to Zinc Binding Sites List in 3oke
Zinc binding site 1 out of 1 in the Crystal Structure of S25-39 in Complex with Ko


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S25-39 in Complex with Ko within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn215

b:56.7
occ:1.00
OE2 B:GLU58 2.3 42.7 1.0
CD B:GLU58 3.3 44.1 1.0
OE1 B:GLU58 3.5 51.3 1.0
NH1 B:ARG52 3.6 43.7 1.0
NH2 B:ARG52 4.3 41.3 1.0
CZ B:ARG52 4.3 45.6 1.0
O B:THR57 4.4 53.5 1.0
CG B:GLU58 4.6 44.6 1.0

Reference:

R.J.Blackler, C.L.Brooks, D.W.Evans, L.Brade, P.Kosma, H.Brade, S.V.Evans. A Common NH53K Mutation in the Combining Site of Antibodies Raised Against Chlamydial Lps Glycoconjugates Significantly Increases Avidity. Biochemistry V. 50 3357 2011.
ISSN: ISSN 0006-2960
PubMed: 21405106
DOI: 10.1021/BI101886V
Page generated: Wed Aug 20 12:37:42 2025

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