Zinc in PDB 3oj6: Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis

All present enzymatic activity of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis:
3.5.4.23;

The structure of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis, PDB code: 3oj6 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.30 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.480, 56.280, 90.290, 90.00, 95.09, 90.00
R / Rfree (%)	15.1 / 18.9

The structure of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis (pdb code 3oj6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis, PDB code: 3oj6:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn150 b:10.8 occ:1.00 O1 A:EDO151 2.1 9.3 1.0 SG A:CYS94 2.3 8.7 1.0 SG A:CYS57 2.3 9.0 1.0 SG A:CYS91 2.3 9.2 1.0 C1 A:EDO151 3.0 11.8 1.0 CB A:CYS57 3.1 8.6 1.0 CB A:CYS94 3.3 9.0 1.0 CB A:CYS91 3.4 8.7 1.0 O A:HOH148 3.5 12.2 1.0 N A:CYS91 3.7 8.8 1.0 OE2 A:GLU59 4.0 10.3 1.0 N A:CYS94 4.0 8.7 1.0 OE1 A:GLU59 4.0 8.2 1.0 CA A:CYS91 4.1 8.3 1.0 C2 A:EDO151 4.2 12.6 1.0 CA A:CYS94 4.2 8.1 1.0 O2 A:EDO151 4.2 11.0 1.0 CD A:GLU59 4.2 9.4 1.0 CA A:CYS57 4.5 8.0 1.0 O A:CYS91 4.6 7.9 1.0 C A:CYS91 4.6 8.1 1.0 OD1 C:ASN53 4.6 14.3 1.0 C A:PRO90 4.8 9.0 1.0 CE2 C:PHE52 4.9 14.3 1.0 O A:HOH147 4.9 11.1 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn150 b:13.1 occ:1.00 O1 B:EDO151 2.1 12.9 1.0 SG B:CYS94 2.3 11.6 1.0 SG B:CYS91 2.3 11.5 1.0 SG B:CYS57 2.3 11.0 1.0 CB B:CYS57 3.0 10.2 1.0 C1 B:EDO151 3.1 14.4 1.0 CB B:CYS94 3.2 10.8 1.0 CB B:CYS91 3.4 10.5 1.0 O B:HOH219 3.5 13.4 1.0 N B:CYS91 3.7 12.2 1.0 OE2 B:GLU59 4.0 13.5 1.0 OE1 B:GLU59 4.1 11.1 1.0 CA B:CYS91 4.1 11.6 1.0 N B:CYS94 4.1 9.3 1.0 CD B:GLU59 4.2 10.9 1.0 CA B:CYS94 4.2 9.9 1.0 C2 B:EDO151 4.3 15.8 1.0 O2 B:EDO151 4.3 15.6 1.0 CA B:CYS57 4.5 10.7 1.0 OD1 D:ASN53 4.6 14.5 1.0 O B:CYS91 4.6 10.2 1.0 C B:CYS91 4.6 11.0 1.0 C B:PRO90 4.8 12.3 1.0 O B:HOH243 4.9 15.4 1.0 O B:HOH148 4.9 13.1 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn150 b:11.8 occ:1.00 O1 C:EDO151 2.1 10.0 1.0 SG C:CYS94 2.3 9.0 1.0 SG C:CYS91 2.3 9.4 1.0 SG C:CYS57 2.3 10.3 1.0 C1 C:EDO151 3.0 14.4 1.0 CB C:CYS57 3.0 11.2 1.0 CB C:CYS94 3.3 11.1 1.0 CB C:CYS91 3.4 10.4 1.0 O C:HOH248 3.4 9.7 1.0 N C:CYS91 3.7 10.0 1.0 OE2 C:GLU59 4.0 12.6 1.0 OE1 C:GLU59 4.0 13.2 1.0 CA C:CYS91 4.1 9.6 1.0 N C:CYS94 4.1 9.5 1.0 CD C:GLU59 4.2 10.8 1.0 C2 C:EDO151 4.2 14.6 1.0 CA C:CYS94 4.3 10.1 1.0 O2 C:EDO151 4.3 14.1 1.0 CA C:CYS57 4.5 10.6 1.0 C C:CYS91 4.6 9.4 1.0 OD1 A:ASN53 4.6 13.1 1.0 O C:CYS91 4.6 10.3 1.0 C C:PRO90 4.8 10.5 1.0 O C:HOH145 4.9 12.2 1.0 O C:HOH154 4.9 12.5 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn150 b:9.9 occ:1.00 O1 D:EDO151 2.1 9.1 1.0 SG D:CYS94 2.3 8.9 1.0 SG D:CYS57 2.3 8.7 1.0 SG D:CYS91 2.3 8.1 1.0 CB D:CYS57 3.1 8.7 1.0 C1 D:EDO151 3.1 11.7 1.0 CB D:CYS94 3.2 6.4 1.0 CB D:CYS91 3.4 7.6 1.0 O D:HOH267 3.4 11.0 1.0 N D:CYS91 3.7 7.9 1.0 OE2 D:GLU59 4.0 9.9 1.0 OE1 D:GLU59 4.0 7.6 1.0 N D:CYS94 4.0 7.4 1.0 CA D:CYS91 4.1 8.4 1.0 CA D:CYS94 4.2 7.5 1.0 CD D:GLU59 4.2 7.7 1.0 C2 D:EDO151 4.2 13.2 1.0 O2 D:EDO151 4.3 11.4 1.0 CA D:CYS57 4.5 7.4 1.0 C D:CYS91 4.6 8.9 1.0 O D:CYS91 4.6 9.0 1.0 OD1 B:ASN53 4.6 14.6 1.0 C D:PRO90 4.8 8.6 1.0 CE2 B:PHE52 4.9 14.5 1.0 O D:HOH149 5.0 12.1 1.0

Ssgcid, J.Abendroth, A.S.Gardberg, B.Staker. Crystal Structure of Blasticidin S Deaminase From Coccidioides Immitis To Be Published.