Zinc in PDB 3o8c: Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

All present enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv:
3.4.21.98; 3.6.1.15; 3.6.4.13;

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8c was solved by T.C.Appleby, J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.22 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	91.699, 110.166, 142.939, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 23.2

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv also contains other interesting chemical elements:

Bromine

(Br)

1 atom

The binding sites of Zinc atom in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv (pdb code 3o8c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8c:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn800 b:46.1 occ:1.00 SG A:CYS145 2.3 37.0 1.0 SG A:CYS99 2.3 43.0 1.0 SG A:CYS97 2.5 44.0 1.0 ND1 A:HIS149 2.6 45.8 1.0 CB A:CYS145 3.2 39.0 1.0 CB A:CYS97 3.3 42.5 1.0 CB A:CYS99 3.5 49.4 1.0 CG A:HIS149 3.5 45.0 1.0 CE1 A:HIS149 3.6 47.9 1.0 CB A:HIS149 3.6 39.8 1.0 CA A:CYS97 3.9 41.4 1.0 N A:CYS99 3.9 48.9 1.0 CA A:CYS99 4.3 47.2 1.0 N A:THR98 4.3 46.9 1.0 C A:CYS97 4.4 48.3 1.0 CB A:SER147 4.4 38.7 1.0 O A:HOH1011 4.4 44.4 1.0 CA A:CYS145 4.6 38.1 1.0 CD2 A:HIS149 4.6 43.4 1.0 NE2 A:HIS149 4.7 49.1 1.0 OG A:SER147 4.7 40.9 1.0 CA A:HIS149 4.9 35.8 1.0 C A:CYS99 4.9 51.9 1.0 N A:HIS149 5.0 29.9 1.0 N A:GLY100 5.0 48.4 1.0 N A:SER147 5.0 35.8 1.0 CB A:SER101 5.0 47.7 1.0

Zinc binding site 2 out of 2 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn800 b:51.2 occ:1.00 SG B:CYS99 2.4 61.3 1.0 SG B:CYS145 2.4 43.5 1.0 O B:HOH906 2.5 51.9 1.0 SG B:CYS97 2.6 52.0 1.0 CB B:CYS145 3.1 39.5 1.0 CB B:CYS97 3.3 42.3 1.0 ND1 B:HIS149 3.4 50.1 1.0 CB B:CYS99 3.5 57.6 1.0 N B:CYS99 3.7 50.9 1.0 CB B:HIS149 3.7 41.1 1.0 CA B:CYS97 3.8 46.4 1.0 CG B:HIS149 3.9 48.1 1.0 N B:THR98 4.0 51.6 1.0 CA B:CYS99 4.2 53.9 1.0 C B:CYS97 4.4 50.3 1.0 O B:HOH980 4.4 45.4 1.0 CE1 B:HIS149 4.5 50.1 1.0 CB B:SER147 4.5 42.3 1.0 CA B:CYS145 4.6 37.3 1.0 OG B:SER147 4.8 48.6 1.0 C B:THR98 4.8 54.8 1.0 CA B:HIS149 4.8 41.1 1.0 N B:HIS149 4.9 36.6 1.0 N B:GLY100 5.0 55.7 1.0

T.C.Appleby, R.Anderson, O.Fedorova, A.M.Pyle, R.Wang, X.Liu, K.M.Brendza, J.R.Somoza. Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv. J.Mol.Biol. V. 405 1139 2011.
ISSN: ISSN 0022-2836
PubMed: 21145896
DOI: 10.1016/J.JMB.2010.11.034