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Zinc in PDB 3nhe: High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin

Enzymatic activity of High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin

All present enzymatic activity of High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin:
3.1.2.15;

Protein crystallography data

The structure of High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin, PDB code: 3nhe was solved by N.Schormann, L.J.Delucas, D.Powell Mccombs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.18 / 1.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.771, 53.961, 74.719, 90.00, 107.71, 90.00
R / Rfree (%) 16.9 / 18.9

Zinc Binding Sites:

The binding sites of Zinc atom in the High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin (pdb code 3nhe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin, PDB code: 3nhe:

Zinc binding site 1 out of 1 in 3nhe

Go back to Zinc Binding Sites List in 3nhe
Zinc binding site 1 out of 1 in the High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High Resolution Structure (1.26A) of USP2A in Complex with Ubiquitin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:11.3
occ:1.00
SG A:CYS476 2.3 11.7 1.0
SG A:CYS425 2.3 9.7 1.0
SG A:CYS479 2.3 13.4 1.0
SG A:CYS428 2.3 10.0 1.0
CB A:CYS425 3.1 9.2 1.0
CB A:CYS428 3.2 10.8 1.0
CB A:CYS476 3.3 13.8 1.0
CB A:CYS479 3.4 15.9 1.0
N A:CYS428 3.7 11.3 1.0
N A:CYS479 3.8 16.4 1.0
CA A:CYS428 4.0 10.7 1.0
CA A:CYS479 4.2 16.4 1.0
CB A:ARG478 4.3 17.0 1.0
CG A:LYS483 4.5 11.9 1.0
CA A:CYS425 4.6 9.2 1.0
CB A:ASP427 4.7 13.2 1.0
C A:ARG478 4.7 16.8 1.0
CA A:CYS476 4.7 14.4 1.0
C A:ASP427 4.8 12.1 1.0
C A:CYS428 4.9 10.3 1.0
O A:HOH682 4.9 0.1 1.0
CA A:ARG478 4.9 17.1 1.0
N A:GLY429 5.0 10.1 1.0

Reference:

N.Schormann, D.Powell Mccombs, L.J.Delucas. High Resolution Structure of USP2A in Complex with Ubiquitin To Be Published.
Page generated: Sat Oct 26 10:15:38 2024

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