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Zinc in PDB 3n6w: Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase

Enzymatic activity of Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase

All present enzymatic activity of Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase:
1.14.11.1;

Protein crystallography data

The structure of Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase, PDB code: 3n6w was solved by J.Rumnieks, A.Zeltins, A.Leonchiks, A.Kazaks, S.Kotelovica, K.Tars, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 142.72 / 2.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 164.800, 164.800, 97.780, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase (pdb code 3n6w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase, PDB code: 3n6w:

Zinc binding site 1 out of 1 in 3n6w

Go back to Zinc Binding Sites List in 3n6w
Zinc binding site 1 out of 1 in the Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:23.2
occ:1.00
NE2 A:HIS82 2.1 29.9 1.0
SG A:CYS38 2.2 21.7 1.0
SG A:CYS43 2.2 23.5 1.0
SG A:CYS40 2.4 24.7 1.0
CE1 A:HIS82 3.1 30.8 1.0
CD2 A:HIS82 3.1 29.6 1.0
CB A:CYS38 3.2 21.6 1.0
CB A:CYS43 3.3 23.5 1.0
CB A:CYS40 3.3 24.2 1.0
O A:HOH625 3.9 36.5 1.0
NH1 A:ARG35 4.1 21.3 1.0
N A:CYS43 4.1 23.4 1.0
N A:CYS40 4.1 24.3 1.0
CA A:CYS40 4.1 24.5 1.0
ND1 A:HIS82 4.2 29.6 1.0
CG A:HIS82 4.2 30.8 1.0
CA A:CYS43 4.3 23.8 1.0
O A:TYR83 4.4 30.7 1.0
CA A:CYS38 4.5 21.5 1.0
O A:CYS40 4.5 24.4 1.0
C A:CYS40 4.5 24.6 1.0
C A:CYS38 4.6 22.0 1.0
O A:HOH539 4.6 27.3 1.0
CB A:ASP42 4.6 24.7 1.0
O A:CYS38 4.6 21.5 1.0
OG A:SER84 4.6 29.2 1.0
CZ A:ARG35 4.7 22.8 1.0
NH2 A:ARG35 4.8 21.6 1.0
C A:ASP42 4.9 23.7 1.0

Reference:

K.Tars, J.Rumnieks, A.Zeltins, A.Kazaks, S.Kotelovica, A.Leonciks, J.Sharipo, A.Viksna, J.Kuka, E.Liepinsh, M.Dambrova. Crystal Structure of Human Gamma-Butyrobetaine Hydroxylase. Biochem.Biophys.Res.Commun. V. 398 634 2010.
ISSN: ISSN 0006-291X
PubMed: 20599753
DOI: 10.1016/J.BBRC.2010.06.121
Page generated: Wed Aug 20 12:09:55 2025

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