Atomistry » Zinc » PDB 3m6r-3mhx » 3m9g
Atomistry »
  Zinc »
    PDB 3m6r-3mhx »
      3m9g »

Zinc in PDB 3m9g: Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus

Enzymatic activity of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus

All present enzymatic activity of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus, PDB code: 3m9g was solved by P.Paracuellos, A.Ballandras, X.Robert, C.Creze, A.J.Cozzone, B.Duclos, P.Gouet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.77 / 2.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 91.860, 101.210, 74.750, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 30.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus (pdb code 3m9g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus, PDB code: 3m9g:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 1 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2000

b:54.0
occ:1.00
OE1 A:GLU539 1.8 41.6 1.0
O A:HOH1000 2.7 12.1 1.0
CD A:GLU539 2.7 38.8 1.0
OE2 A:GLU539 3.1 42.2 1.0
CG A:GLU539 4.1 34.2 1.0
CG2 A:THR568 4.4 44.7 1.0

Zinc binding site 2 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 2 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:45.5
occ:1.00
OD2 A:ASP432 1.9 27.6 1.0
OE1 A:GLU429 2.1 45.7 1.0
O A:HOH1009 2.5 20.9 1.0
CD A:GLU429 2.6 42.5 1.0
OD1 A:ASP432 2.6 33.9 1.0
CG A:ASP432 2.6 28.9 1.0
OE2 A:GLU429 3.1 43.0 1.0
CG A:GLU429 3.5 41.3 1.0
CB A:GLU429 3.8 40.6 1.0
N A:GLU429 4.1 40.2 1.0
CB A:ASP432 4.1 32.1 1.0
CA A:GLU429 4.6 40.8 1.0
CG2 A:VAL428 5.0 35.3 1.0

Zinc binding site 3 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 3 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2002

b:63.5
occ:1.00
OD1 A:ASP546 1.8 36.0 1.0
O A:HOH1010 1.8 65.0 1.0
OXT A:GLY576 2.6 48.0 1.0
CG A:ASP546 3.0 39.0 1.0
OD2 A:ASP546 3.6 44.4 1.0
C A:GLY576 3.6 46.5 1.0
O A:GLY576 4.0 47.6 1.0
CB A:ASP546 4.2 40.3 1.0
O A:SER545 4.2 37.2 1.0
C A:SER545 4.6 39.1 1.0
CA A:ASP546 4.7 39.9 1.0
N A:ASP546 4.7 37.7 1.0
CD2 A:TYR544 4.9 26.0 1.0
CA A:GLY576 5.0 45.1 1.0
O A:HOH1044 5.0 44.4 1.0

Zinc binding site 4 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 4 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2003

b:60.7
occ:1.00
OE2 A:GLU543 2.0 36.1 1.0
OE1 A:GLU543 2.3 43.5 1.0
CD A:GLU543 2.5 37.3 1.0
CG A:GLU543 4.0 36.3 1.0
CG1 A:VAL572 4.9 39.4 1.0
CB A:GLU543 4.9 35.7 1.0

Zinc binding site 5 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 5 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2004

b:65.0
occ:1.00
O A:HOH1011 2.3 26.5 1.0
OD1 A:ASP552 2.9 49.6 1.0
O A:HOH1065 3.0 65.0 1.0
OD2 A:ASP552 3.1 52.5 1.0
CG A:ASP552 3.4 51.0 1.0
OD1 A:ASP549 4.5 61.8 1.0
NZ A:LYS522 4.6 27.4 1.0
CD A:LYS522 4.8 44.7 1.0
CB A:ASP549 4.8 55.2 1.0
O A:HOH1060 4.9 63.9 1.0
CB A:ASP552 4.9 48.4 1.0
CG A:ASP549 5.0 59.5 1.0

Zinc binding site 6 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 6 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2005

b:65.0
occ:1.00
OD2 A:ASP381 3.1 36.8 1.0
O A:HOH1012 3.2 43.9 1.0
OD1 A:ASP381 3.7 42.0 1.0
CG A:ASP381 3.8 35.4 1.0
CB A:ILE383 4.6 20.0 1.0
O A:ILE383 4.9 33.0 1.0

Zinc binding site 7 out of 7 in 3m9g

Go back to Zinc Binding Sites List in 3m9g
Zinc binding site 7 out of 7 in the Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of the Three-Pasta-Domain of A Ser/Thr Kinase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2006

b:65.0
occ:0.50
NE2 A:HIS521 2.0 52.6 1.0
CD2 A:HIS521 2.5 50.5 1.0
CE1 A:HIS521 3.3 55.1 1.0
CG A:HIS521 3.8 49.3 1.0
ND1 A:HIS521 4.1 53.3 1.0
CD1 A:ILE548 4.1 18.4 1.0
CG1 A:ILE548 4.5 29.3 1.0
O A:ILE554 4.7 30.3 1.0
O A:GLU520 4.8 52.4 1.0
O A:VAL553 4.9 35.1 1.0
C A:GLU520 4.9 47.2 1.0

Reference:

P.Paracuellos, A.Ballandras, X.Robert, R.Kahn, M.Herve, D.Mengin-Lecreulx, A.J.Cozzone, B.Duclos, P.Gouet. The Extended Conformation of the 2.9-A Crystal Structure of the Three-Pasta Domain of A Ser/Thr Kinase From the Human Pathogen Staphylococcus Aureus J.Mol.Biol. V. 404 847 2010.
ISSN: ISSN 0022-2836
PubMed: 20965199
DOI: 10.1016/J.JMB.2010.10.012
Page generated: Sat Oct 26 09:19:40 2024

Last articles

Fe in 7R2S
Fe in 7R0W
Fe in 7R2R
Fe in 7R2P
Fe in 7R2O
Fe in 7R1J
Fe in 7R1I
Fe in 7QWT
Fe in 7R1H
Fe in 7R0F
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy