Zinc in PDB 3lqb: Crystal Structure of the Hatching Enzyme ZHE1 From the Zebrafish Danio Rerio

The structure of Crystal Structure of the Hatching Enzyme ZHE1 From the Zebrafish Danio Rerio, PDB code: 3lqb was solved by M.Tanokura, A.Okada, K.Nagata, S.Yasumasu, J.Ohtsuka, I.Iuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.98 / 1.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	32.970, 62.680, 87.340, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 18.7

The binding sites of Zinc atom in the Crystal Structure of the Hatching Enzyme ZHE1 From the Zebrafish Danio Rerio (pdb code 3lqb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Hatching Enzyme ZHE1 From the Zebrafish Danio Rerio, PDB code: 3lqb:

Zinc binding site 1 out of 1 in the Crystal Structure of the Hatching Enzyme ZHE1 From the Zebrafish Danio Rerio


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Hatching Enzyme ZHE1 From the Zebrafish Danio Rerio within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:7.5 occ:1.00 O3 A:SO4200 1.9 8.6 0.5 NE2 A:HIS109 2.0 6.7 1.0 NE2 A:HIS99 2.0 6.2 1.0 NE2 A:HIS103 2.1 6.9 1.0 O4 A:SO4200 2.6 12.1 0.5 S A:SO4200 2.8 10.6 0.5 CD2 A:HIS99 3.0 6.8 1.0 CD2 A:HIS109 3.0 7.3 1.0 CE1 A:HIS109 3.0 7.5 1.0 CE1 A:HIS103 3.0 6.8 1.0 CD2 A:HIS103 3.1 6.7 1.0 CE1 A:HIS99 3.1 6.7 1.0 O1 A:SO4200 3.6 8.8 0.5 O2 A:SO4200 4.0 11.2 0.5 O A:HOH329 4.0 13.2 1.0 ND1 A:HIS109 4.1 7.6 1.0 CG A:HIS109 4.1 7.0 1.0 ND1 A:HIS99 4.2 6.7 1.0 CG A:HIS99 4.2 6.5 1.0 ND1 A:HIS103 4.2 7.2 1.0 O A:HOH269 4.2 17.2 1.0 CG A:HIS103 4.2 6.6 1.0 OE1 A:GLU100 4.3 10.1 1.0 O A:HOH213 4.3 12.7 1.0 O A:HOH375 4.5 20.2 1.0 O A:HOH207 4.7 15.3 1.0 CE A:MET153 4.7 8.5 1.0 OE2 A:GLU100 4.8 11.9 1.0 O A:HOH239 4.8 14.0 1.0 O A:HOH242 4.9 20.1 1.0 CD A:GLU100 4.9 10.2 1.0

A.Okada, K.Sano, K.Nagata, S.Yasumasu, J.Ohtsuka, A.Yamamura, K.Kubota, I.Iuchi, M.Tanokura. Crystal Structure of Zebrafish Hatching Enzyme 1 From the Zebrafish Danio Rerio J.Mol.Biol. V. 402 865 2010.
ISSN: ISSN 0022-2836
PubMed: 20727360
DOI: 10.1016/J.JMB.2010.08.023