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Zinc in PDB 3k6j: Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans

Protein crystallography data

The structure of Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans, PDB code: 3k6j was solved by Z.Ouyang, K.Zhang, Y.Zhai, J.Lu, F.Sun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.09 / 2.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.025, 90.657, 66.206, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 26.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans (pdb code 3k6j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans, PDB code: 3k6j:

Zinc binding site 1 out of 1 in 3k6j

Go back to Zinc Binding Sites List in 3k6j
Zinc binding site 1 out of 1 in the Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn800

b:20.0
occ:1.00
ND1 A:HIS173 1.9 19.5 1.0
NE2 A:HIS-5 1.9 29.8 1.0
OE2 A:GLU185 2.0 18.8 1.0
SG A:CYS217 2.3 22.5 1.0
CE1 A:HIS173 2.8 22.4 1.0
CD2 A:HIS-5 2.9 28.9 1.0
CD A:GLU185 2.9 16.8 1.0
CE1 A:HIS-5 3.0 28.6 1.0
CG A:HIS173 3.0 20.4 1.0
OE1 A:GLU185 3.2 18.6 1.0
CB A:CYS217 3.2 21.4 1.0
CB A:HIS173 3.5 17.4 1.0
CA A:CYS217 3.7 21.7 1.0
NE2 A:HIS173 4.0 22.8 1.0
CG A:HIS-5 4.0 32.5 1.0
ND1 A:HIS-5 4.1 29.9 1.0
CD2 A:HIS173 4.1 20.1 1.0
N A:LYS218 4.1 21.5 1.0
CG A:GLU185 4.2 15.4 1.0
CD1 A:ILE187 4.3 21.2 1.0
C A:CYS217 4.4 21.6 1.0
CB A:HIS-6 4.4 38.7 1.0
CB A:GLU185 4.6 15.9 1.0
N A:SER219 4.7 25.2 1.0
CZ A:PHE175 4.8 20.4 1.0
N A:CYS217 5.0 21.7 1.0

Reference:

Z.Ouyang, K.Zhang, Y.Zhai, J.Lu, F.Sun. Crystal Structure of the Dehydrogenase Part of Multifuctional Enzyme 1 From C.Elegans To Be Published.
Page generated: Sat Oct 26 07:42:20 2024

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