Zinc in PDB 3jck: Structure of the Yeast 26S Proteasome Lid Sub-Complex

All present enzymatic activity of Structure of the Yeast 26S Proteasome Lid Sub-Complex:
3.4.19.12;

The binding sites of Zinc atom in the Structure of the Yeast 26S Proteasome Lid Sub-Complex (pdb code 3jck). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Yeast 26S Proteasome Lid Sub-Complex, PDB code: 3jck:

Zinc binding site 1 out of 1 in the Structure of the Yeast 26S Proteasome Lid Sub-Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Yeast 26S Proteasome Lid Sub-Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn500 b:22.5 occ:1.00 CE1 G:HIS109 1.9 54.4 1.0 NE2 G:HIS111 1.9 54.4 1.0 NE2 G:HIS109 2.0 54.4 1.0 OD2 G:ASP122 2.1 59.8 1.0 O B:HOH501 2.2 79.1 1.0 OD1 G:ASP122 2.3 59.8 1.0 CD2 G:HIS111 2.4 54.4 1.0 CG G:ASP122 2.5 59.8 1.0 CE1 G:HIS111 3.2 54.4 1.0 ND1 G:HIS109 3.2 54.4 1.0 CD2 G:HIS109 3.3 54.4 1.0 CG G:HIS111 3.7 54.4 1.0 OE1 G:GLU48 3.7 57.0 1.0 ND2 B:ASN275 3.8 54.1 1.0 CG G:HIS109 3.9 54.4 1.0 ND1 G:HIS111 4.0 54.4 1.0 CB G:ASP122 4.0 59.8 1.0 CG1 G:VAL78 4.2 60.1 1.0 CD G:GLU48 4.4 57.0 1.0 OE2 G:GLU48 4.4 57.0 1.0 OG G:SER119 4.4 61.0 1.0 O G:SER110 4.7 54.6 1.0 CG B:ASN275 4.8 54.1 1.0 N G:SER119 4.9 59.0 1.0 O G:TRP117 4.9 60.9 1.0 CA G:ASP122 4.9 65.2 1.0 CB G:HIS111 5.0 54.4 1.0

C.M.Dambacher, E.J.Worden, M.A.Herzik, A.Martin, G.C.Lander. Atomic Structure of the 26S Proteasome Lid Reveals the Mechanism of Deubiquitinase Inhibition. Elife V. 5 13027 2016.
ISSN: ESSN 2050-084X
PubMed: 26744777
DOI: 10.7554/ELIFE.13027