Zinc in PDB 3gj5: Crystal Structure of Human Rangdp-NUP153ZNF4 Complex

The structure of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex, PDB code: 3gj5 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.66 / 1.79
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	70.443, 61.343, 74.025, 90.00, 112.55, 90.00
R / Rfree (%)	19.9 / 23.3

The structure of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex (pdb code 3gj5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex, PDB code: 3gj5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn300 b:41.7 occ:1.00 SG B:CYS855 2.2 39.5 1.0 SG B:CYS869 2.4 43.9 1.0 SG B:CYS866 2.4 45.3 1.0 SG B:CYS852 2.5 44.3 1.0 CB B:CYS866 3.1 42.0 1.0 CB B:CYS852 3.2 39.9 1.0 CB B:CYS855 3.3 33.2 1.0 CB B:CYS869 3.4 41.4 1.0 N B:CYS855 3.7 36.7 1.0 N B:CYS869 3.9 41.4 1.0 CA B:CYS855 4.0 34.0 1.0 CA B:CYS869 4.2 42.3 1.0 CB B:ALA868 4.5 47.9 1.0 CA B:CYS866 4.6 48.5 1.0 CB B:SER871 4.6 61.4 1.0 C B:CYS855 4.6 38.1 1.0 CB B:VAL854 4.7 47.1 1.0 N B:LEU856 4.7 42.0 1.0 CA B:CYS852 4.7 39.5 1.0 C B:VAL854 4.8 39.1 1.0 CB B:VAL857 4.8 39.0 1.0 C B:CYS869 4.8 50.1 1.0 N B:VAL857 4.9 43.7 1.0 C B:ALA868 4.9 45.5 1.0 N B:SER871 5.0 55.9 1.0 N B:GLU870 5.0 51.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn300 b:41.3 occ:1.00 SG D:CYS855 2.3 38.9 1.0 SG D:CYS869 2.4 42.0 1.0 SG D:CYS866 2.4 41.9 1.0 SG D:CYS852 2.4 43.2 1.0 CB D:CYS866 3.1 42.6 1.0 CB D:CYS852 3.2 41.5 1.0 CB D:CYS855 3.3 36.0 1.0 CB D:CYS869 3.5 39.6 1.0 N D:CYS855 3.8 38.8 1.0 N D:CYS869 3.9 40.0 1.0 CA D:CYS855 4.0 35.9 1.0 CA D:CYS869 4.2 43.7 1.0 CB D:ALA868 4.5 44.9 1.0 CB D:VAL854 4.6 39.5 1.0 CA D:CYS866 4.6 49.8 1.0 C D:CYS855 4.6 37.8 1.0 CA D:CYS852 4.7 40.4 1.0 CB D:SER871 4.7 53.4 1.0 C D:VAL854 4.7 42.2 1.0 N D:LEU856 4.8 40.6 1.0 CB D:VAL857 4.8 40.8 1.0 OG D:SER871 4.8 53.0 1.0 C D:CYS869 4.8 46.7 1.0 N D:VAL857 4.9 39.5 1.0 N D:GLU870 4.9 50.7 1.0 C D:ALA868 5.0 45.0 1.0 N D:SER871 5.0 51.2 1.0

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011