Zinc in PDB 3g4h: Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound)

The structure of Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound), PDB code: 3g4h was solved by S.Chakraborti, B.J.Bahnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	84.52 / 1.92
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	64.365, 52.019, 85.832, 90.00, 100.11, 90.00
R / Rfree (%)	22.4 / 25.3

The binding sites of Zinc atom in the Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound) (pdb code 3g4h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound), PDB code: 3g4h:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn300 b:80.6 occ:1.00 O B:HOH344 2.2 63.5 1.0 OE2 B:GLU18 2.2 45.6 1.0 OD1 B:ASN154 2.3 45.3 1.0 OD1 B:ASP204 2.5 49.1 1.0 CD B:GLU18 2.9 47.7 1.0 OE1 B:GLU18 3.0 51.5 1.0 CG B:ASN154 3.3 46.6 1.0 CG B:ASP204 3.6 42.5 1.0 ND2 B:ASN154 3.7 42.6 1.0 ND2 B:ASN103 3.9 42.4 1.0 OD2 B:ASP204 3.9 51.7 1.0 CG B:GLU18 4.2 40.6 1.0 O B:THR246 4.2 35.7 1.0 OD1 B:ASN103 4.3 47.7 1.0 CB B:ASP104 4.3 43.4 1.0 OD2 B:ASP104 4.3 56.9 1.0 CG B:ASN103 4.4 41.7 1.0 CG B:ASP104 4.5 45.2 1.0 N B:GLY205 4.6 41.6 1.0 CB B:ASN154 4.6 37.9 1.0 C B:ASP204 4.7 42.7 1.0 CB B:ASP204 4.8 43.6 1.0 CA B:GLY205 4.9 38.0 1.0 CB B:SER247 5.0 40.3 1.0 CA B:ASN154 5.0 39.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Senescence Marker Protein-30 (Zinc Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:61.1 occ:1.00 OE2 A:GLU18 2.0 37.5 1.0 OD1 A:ASP204 2.2 41.5 1.0 OD1 A:ASN154 2.4 34.0 1.0 O A:HOH356 2.5 83.3 1.0 O A:HOH315 2.6 33.3 1.0 O A:HOH326 2.6 52.5 1.0 CD A:GLU18 2.9 48.5 1.0 CG A:ASN154 3.2 43.0 1.0 CG A:ASP204 3.3 33.4 1.0 OE1 A:GLU18 3.3 40.3 1.0 ND2 A:ASN154 3.6 32.3 1.0 ND2 A:ASN103 3.8 39.1 1.0 OD2 A:ASP204 3.8 38.5 1.0 O A:THR246 4.1 25.9 1.0 CG A:GLU18 4.1 35.9 1.0 N A:GLY205 4.4 30.2 1.0 OD1 A:ASN103 4.4 37.0 1.0 CB A:ASP104 4.4 33.6 1.0 CG A:ASN103 4.5 35.5 1.0 O A:HOH333 4.5 49.1 1.0 OD2 A:ASP104 4.5 42.0 1.0 CB A:ASP204 4.5 38.1 1.0 CB A:ASN154 4.6 35.1 1.0 C A:ASP204 4.6 35.5 1.0 CG A:ASP104 4.6 46.1 1.0 CA A:ASP204 4.8 34.1 1.0 CA A:GLY205 4.9 34.0 1.0 CB A:THR246 5.0 31.6 1.0 C A:THR246 5.0 31.4 1.0

S.Chakraborti, B.J.Bahnson. Crystal Structure of Human Senescence Marker Protein 30: Insights Linking Structural, Enzymatic, and Physiological Functions . Biochemistry V. 49 3436 2010.
ISSN: ISSN 0006-2960
PubMed: 20329768
DOI: 10.1021/BI9022297