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Zinc in PDB 3fm2: Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution, PDB code: 3fm2 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.230, 61.750, 84.510, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 21.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution (pdb code 3fm2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution, PDB code: 3fm2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3fm2

Go back to Zinc Binding Sites List in 3fm2
Zinc binding site 1 out of 2 in the Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn135

b:35.2
occ:0.80
OE1 A:GLU57 1.9 32.5 1.0
NE2 A:HIS59 2.2 25.8 1.0
O B:HOH156 2.4 42.9 1.0
O A:HOH159 2.5 38.7 1.0
OE2 B:GLU30 2.5 32.4 1.0
OE1 B:GLU30 2.7 34.1 1.0
CD B:GLU30 2.9 30.7 1.0
CD A:GLU57 3.0 32.0 1.0
O A:HOH230 3.0 45.2 1.0
CD2 A:HIS59 3.2 26.1 1.0
CE1 A:HIS59 3.2 26.8 1.0
CG A:GLU57 3.6 31.3 1.0
CB A:GLU57 3.9 30.2 1.0
OE2 A:GLU57 4.1 33.7 1.0
CG B:GLU30 4.2 29.2 1.0
ND1 A:HIS59 4.3 26.1 1.0
CG A:HIS59 4.3 25.3 1.0
O A:HOH278 4.8 45.8 1.0
CB B:GLU30 4.9 28.2 1.0

Zinc binding site 2 out of 2 in 3fm2

Go back to Zinc Binding Sites List in 3fm2
Zinc binding site 2 out of 2 in the Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Heme-Binding Protein (AVA_4353) From Anabaena Variabilis Atcc 29413 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn135

b:34.8
occ:0.80
OE1 B:GLU57 1.8 35.9 1.0
NE2 B:HIS59 2.0 26.2 1.0
OE2 A:GLU30 2.0 30.4 1.0
O B:HOH153 2.0 48.4 1.0
CD A:GLU30 2.9 28.3 1.0
CD2 B:HIS59 2.9 26.4 1.0
CD B:GLU57 3.0 35.5 1.0
CE1 B:HIS59 3.0 26.4 1.0
OE1 A:GLU30 3.1 30.8 1.0
CG B:GLU57 3.6 35.0 1.0
O A:HOH154 3.9 47.2 1.0
OE2 B:GLU57 4.0 37.3 1.0
CG B:HIS59 4.1 26.7 1.0
ND1 B:HIS59 4.1 26.3 1.0
CG A:GLU30 4.2 27.3 1.0
CB B:GLU57 4.4 34.5 1.0
NH2 A:ARG19 4.8 36.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Oct 24 13:17:56 2024

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