Zinc in PDB 3fb4: Crystal Structure of Adenylate Kinase From Marinibacillus Marinus

All present enzymatic activity of Crystal Structure of Adenylate Kinase From Marinibacillus Marinus:
2.7.4.3;

The structure of Crystal Structure of Adenylate Kinase From Marinibacillus Marinus, PDB code: 3fb4 was solved by M.G.Davlieva, Y.Shamoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	92.639, 46.506, 62.669, 90.00, 98.67, 90.00
R / Rfree (%)	18 / 22.6

The binding sites of Zinc atom in the Crystal Structure of Adenylate Kinase From Marinibacillus Marinus (pdb code 3fb4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Adenylate Kinase From Marinibacillus Marinus, PDB code: 3fb4:

Zinc binding site 1 out of 1 in the Crystal Structure of Adenylate Kinase From Marinibacillus Marinus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Adenylate Kinase From Marinibacillus Marinus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn217 b:16.0 occ:1.00 OD2 A:ASP153 2.2 16.0 1.0 SG A:CYS133 2.3 14.6 1.0 SG A:CYS130 2.3 11.2 1.0 SG A:CYS150 2.4 12.2 1.0 OD1 A:ASP153 2.7 15.3 1.0 CG A:ASP153 2.8 14.0 1.0 CB A:CYS130 3.1 11.6 1.0 CB A:CYS150 3.1 10.5 1.0 CB A:CYS133 3.4 15.0 1.0 N A:CYS133 3.8 14.4 1.0 CA A:CYS133 4.1 14.8 1.0 CB A:ASP153 4.3 12.0 1.0 CB A:LYS152 4.4 13.0 1.0 CA A:CYS130 4.5 11.2 1.0 CA A:CYS150 4.6 11.2 1.0 N A:ASP153 4.6 11.2 1.0 CB A:ALA135 4.7 12.1 1.0 CE A:LYS152 4.8 27.9 1.0 CD A:LYS152 4.8 24.2 1.0 C A:CYS133 4.8 14.6 1.0 CB A:THR132 4.8 15.3 1.0 N A:GLY134 4.8 13.6 1.0 C A:THR132 4.9 15.0 1.0 N A:ALA135 4.9 12.2 1.0 N A:GLY155 4.9 10.5 1.0

M.Davlieva, Y.Shamoo. Structure and Biochemical Characterization of An Adenylate Kinase Originating From the Psychrophilic Organism Marinibacillus Marinus. Acta Crystallogr.,Sect.F V. 65 751 2009.
ISSN: ESSN 1744-3091
PubMed: 19652331
DOI: 10.1107/S1744309109024348