Zinc in PDB 3dgo: A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain

The structure of A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain, PDB code: 3dgo was solved by C.R.Simmons, J.P.Allen, J.C.Chaput, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.49 / 2.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	71.742, 71.742, 55.488, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 23

The structure of A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain (pdb code 3dgo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain, PDB code: 3dgo:

Zinc binding site 1 out of 1 in the A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn80 b:45.9 occ:1.00 SG A:CYS23 2.3 36.5 1.0 SG A:CYS26 2.3 42.4 1.0 SG A:CYS49 2.4 39.5 1.0 SG A:CYS46 2.7 35.3 1.0 CB A:CYS23 3.0 36.3 1.0 CB A:CYS49 3.2 37.3 1.0 CB A:CYS26 3.2 42.7 1.0 N A:CYS26 3.5 43.0 1.0 CB A:CYS46 3.8 35.1 1.0 CA A:CYS26 3.9 43.1 1.0 N A:CYS46 4.0 33.7 1.0 CB A:ALA29 4.4 38.7 1.0 CA A:CYS49 4.4 37.2 1.0 N A:CYS49 4.4 37.4 1.0 CA A:CYS23 4.5 37.0 1.0 CA A:CYS46 4.5 35.2 1.0 C4 A:PEG85 4.6 71.2 1.0 C A:LYS25 4.6 42.6 1.0 CB A:LYS25 4.6 40.4 1.0 C A:CYS26 4.8 43.1 1.0 N A:LYS27 4.9 43.6 1.0 O A:ALA29 5.0 35.5 1.0 CA A:LYS25 5.0 41.0 1.0

C.R.Simmons, J.M.Stomel, M.D.Mcconnell, D.A.Smith, J.L.Watkins, J.P.Allen, J.C.Chaput. A Synthetic Protein Selected For Ligand Binding Affinity Mediates Atp Hydrolysis. Acs Chem.Biol. V. 4 649 2009.
ISSN: ISSN 1554-8929
PubMed: 19522480
DOI: 10.1021/CB900109W