Atomistry » Zinc » PDB 3b7r-3bo5 » 3blb
Atomistry »
  Zinc »
    PDB 3b7r-3bo5 »
      3blb »

Zinc in PDB 3blb: Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution

Enzymatic activity of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution:
3.2.1.114;

Protein crystallography data

The structure of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution, PDB code: 3blb was solved by D.A.Kuntz, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.767, 109.662, 138.900, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution (pdb code 3blb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution, PDB code: 3blb:

Zinc binding site 1 out of 1 in 3blb

Go back to Zinc Binding Sites List in 3blb
Zinc binding site 1 out of 1 in the Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1047

b:7.0
occ:1.00
 NE2 A:HIS471 2.1 5.6 1.0
NE2 A:HIS90 2.1 6.2 1.0
O13 A:SWA1048 2.1 8.0 1.0
OD2 A:ASP204 2.2 6.8 1.0
O11 A:SWA1048 2.2 7.3 1.0
OD1 A:ASP92 2.2 7.9 1.0
CD2 A:HIS90 3.1 7.0 1.0
CE1 A:HIS471 3.1 5.5 1.0
CD2 A:HIS471 3.1 5.1 1.0
C8 A:SWA1048 3.1 8.2 1.0
CE1 A:HIS90 3.1 6.9 1.0
CG A:ASP204 3.2 6.0 1.0
C7 A:SWA1048 3.2 6.5 1.0
CG A:ASP92 3.2 8.2 1.0
OD2 A:ASP92 3.5 8.7 1.0
CB A:ASP204 3.6 7.3 1.0
C9 A:SWA1048 3.9 9.3 1.0
N4 A:SWA1048 3.9 7.1 1.0
OD2 A:ASP472 4.1 6.9 1.0
C3 A:SWA1048 4.1 8.0 1.0
ND1 A:HIS471 4.2 6.0 1.0
CG A:HIS90 4.2 5.8 1.0
ND1 A:HIS90 4.2 7.0 1.0
CG A:HIS471 4.3 5.2 1.0
OD1 A:ASP204 4.3 7.3 1.0
CE1 A:HIS470 4.5 5.3 1.0
CB A:ASP92 4.5 7.0 1.0
O A:HOH2027 4.6 11.2 1.0
C1 A:SWA1048 4.7 6.8 1.0
OH A:TYR269 4.8 10.3 1.0

Reference:

D.A.Kuntz, D.R.Rose. Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom. To Be Published.
Page generated: Thu Oct 24 11:32:32 2024

Last articles

Mg in 7BNR
Mg in 7BNK
Mg in 7BMC
Mg in 7BM9
Mg in 7BM8
Mg in 7BM6
Mg in 7BL4
Mg in 7BL6
Mg in 7BL5
Mg in 7BJT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy