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Zinc in PDB 3blb: Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution

Enzymatic activity of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution:
3.2.1.114;

Protein crystallography data

The structure of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution, PDB code: 3blb was solved by D.A.Kuntz, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.767, 109.662, 138.900, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution (pdb code 3blb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution, PDB code: 3blb:

Zinc binding site 1 out of 1 in 3blb

Go back to Zinc Binding Sites List in 3blb
Zinc binding site 1 out of 1 in the Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1047

b:7.0
occ:1.00
 NE2 A:HIS471 2.1 5.6 1.0
NE2 A:HIS90 2.1 6.2 1.0
O13 A:SWA1048 2.1 8.0 1.0
OD2 A:ASP204 2.2 6.8 1.0
O11 A:SWA1048 2.2 7.3 1.0
OD1 A:ASP92 2.2 7.9 1.0
CD2 A:HIS90 3.1 7.0 1.0
CE1 A:HIS471 3.1 5.5 1.0
CD2 A:HIS471 3.1 5.1 1.0
C8 A:SWA1048 3.1 8.2 1.0
CE1 A:HIS90 3.1 6.9 1.0
CG A:ASP204 3.2 6.0 1.0
C7 A:SWA1048 3.2 6.5 1.0
CG A:ASP92 3.2 8.2 1.0
OD2 A:ASP92 3.5 8.7 1.0
CB A:ASP204 3.6 7.3 1.0
C9 A:SWA1048 3.9 9.3 1.0
N4 A:SWA1048 3.9 7.1 1.0
OD2 A:ASP472 4.1 6.9 1.0
C3 A:SWA1048 4.1 8.0 1.0
ND1 A:HIS471 4.2 6.0 1.0
CG A:HIS90 4.2 5.8 1.0
ND1 A:HIS90 4.2 7.0 1.0
CG A:HIS471 4.3 5.2 1.0
OD1 A:ASP204 4.3 7.3 1.0
CE1 A:HIS470 4.5 5.3 1.0
CB A:ASP92 4.5 7.0 1.0
O A:HOH2027 4.6 11.2 1.0
C1 A:SWA1048 4.7 6.8 1.0
OH A:TYR269 4.8 10.3 1.0

Reference:

D.A.Kuntz, D.R.Rose. Golgi Mannosidase II in Complex with Swainsonine at 1.3 Angstrom. To Be Published.
Page generated: Thu Oct 24 11:32:32 2024

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