Atomistry » Zinc » PDB 3ax1-3b7i » 3ayf
Atomistry »
  Zinc »
    PDB 3ax1-3b7i »
      3ayf »

Zinc in PDB 3ayf: Crystal Structure of Nitric Oxide Reductase

Protein crystallography data

The structure of Crystal Structure of Nitric Oxide Reductase, PDB code: 3ayf was solved by Y.Matsumoto, T.Tosha, A.V.Pisliakov, T.Hino, H.Sugimoti, S.Nagano, Y.Sugita, Y.Shiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.78 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 110.409, 149.648, 151.108, 90.00, 90.00, 90.00
R / Rfree (%) 24.4 / 28.2

Other elements in 3ayf:

The structure of Crystal Structure of Nitric Oxide Reductase also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Iron (Fe) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Nitric Oxide Reductase (pdb code 3ayf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Nitric Oxide Reductase, PDB code: 3ayf:

Zinc binding site 1 out of 1 in 3ayf

Go back to Zinc Binding Sites List in 3ayf
Zinc binding site 1 out of 1 in the Crystal Structure of Nitric Oxide Reductase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Nitric Oxide Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn803

b:55.7
occ:1.00
NE2 A:HIS559 2.1 45.5 1.0
ND1 A:HIS508 2.2 63.4 1.0
O A:HOH978 2.2 36.5 1.0
NE2 A:HIS560 2.2 51.7 1.0
O A:HOH929 2.7 48.8 1.0
CE1 A:HIS508 2.8 63.9 1.0
CE1 A:HIS559 3.0 41.1 1.0
CE1 A:HIS560 3.0 48.4 1.0
CD2 A:HIS560 3.2 48.6 1.0
CD2 A:HIS559 3.2 44.7 1.0
CG A:HIS508 3.3 63.9 1.0
CB A:HIS508 3.9 62.1 1.0
NE2 A:HIS508 4.0 64.7 1.0
ND1 A:HIS560 4.0 50.0 1.0
O A:HOH952 4.1 52.7 1.0
ND1 A:HIS559 4.1 43.5 1.0
CG A:HIS560 4.2 50.4 1.0
CD2 A:HIS508 4.2 63.5 1.0
CG A:HIS559 4.3 45.8 1.0
ND A:HEM802 4.5 40.4 1.0
FE A:HEM802 4.6 40.8 1.0
C1D A:HEM802 4.7 40.9 1.0
NC A:HEM802 4.7 36.1 1.0
O A:GLY556 4.7 45.3 1.0
CA A:HIS508 4.8 60.0 1.0
CHD A:HEM802 4.9 40.7 1.0
C4C A:HEM802 5.0 40.2 1.0
C4D A:HEM802 5.0 39.4 1.0

Reference:

Y.Matsumoto, T.Tosha, A.V.Pisliakov, T.Hino, H.Sugimoto, S.Nagano, Y.Sugita, Y.Shiro. Crystal Structure of Quinol-Dependent Nitric Oxide Reductase From Geobacillus Stearothermophilus Nat.Struct.Mol.Biol. V. 19 238 2012.
ISSN: ISSN 1545-9993
PubMed: 22266822
DOI: 10.1038/NSMB.2213
Page generated: Thu Oct 24 11:19:06 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy