Atomistry » Zinc » PDB 3adr-3avs » 3asn
Atomistry »
  Zinc »
    PDB 3adr-3avs »
      3asn »

Zinc in PDB 3asn: Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength

Enzymatic activity of Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength

All present enzymatic activity of Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength:
1.9.3.1;

Protein crystallography data

The structure of Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength, PDB code: 3asn was solved by M.Suga, N.Yano, K.Muramoto, K.Shinzawa-Itoh, T.Maeda, E.Yamashita, T.Tsukihara, S.Yoshikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 181.826, 204.098, 177.829, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 18.7

Other elements in 3asn:

The structure of Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength also contains other interesting chemical elements:

Sodium (Na) 2 atoms
Copper (Cu) 6 atoms
Iron (Fe) 4 atoms
Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength (pdb code 3asn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength, PDB code: 3asn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3asn

Go back to Zinc Binding Sites List in 3asn
Zinc binding site 1 out of 2 in the Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn99

b:22.0
occ:1.00
SG F:CYS60 2.3 23.6 1.0
SG F:CYS62 2.3 19.9 1.0
SG F:CYS82 2.4 21.9 1.0
SG F:CYS85 2.4 22.4 1.0
CB F:CYS82 3.2 20.4 1.0
CB F:CYS60 3.3 17.6 1.0
CB F:CYS85 3.4 20.3 1.0
CB F:CYS62 3.4 21.7 1.0
CA F:CYS62 3.6 22.1 1.0
N F:CYS85 3.8 20.9 1.0
N F:CYS62 4.1 21.9 1.0
CA F:CYS85 4.2 21.2 1.0
O F:CYS60 4.2 19.6 1.0
C F:CYS60 4.4 18.6 1.0
CA F:CYS60 4.5 17.9 1.0
O F:HOH2514 4.5 28.1 1.0
CA F:CYS82 4.7 19.9 1.0
OG F:SER84 4.7 22.1 1.0
CB F:SER84 4.8 20.6 1.0
C F:SER84 4.8 20.6 1.0
C F:ILE61 4.9 20.8 1.0
CG2 F:THR87 4.9 26.3 1.0
CG1 F:ILE70 4.9 15.8 1.0
C F:CYS85 4.9 22.0 1.0
C F:CYS62 4.9 23.0 1.0
CB F:ILE70 5.0 16.2 1.0

Zinc binding site 2 out of 2 in 3asn

Go back to Zinc Binding Sites List in 3asn
Zinc binding site 2 out of 2 in the Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State Measured at 1.7470 Angstrom Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn99

b:22.7
occ:1.00
SG S:CYS62 2.3 25.3 1.0
SG S:CYS60 2.3 15.7 1.0
SG S:CYS85 2.4 19.6 1.0
SG S:CYS82 2.4 22.0 1.0
CB S:CYS82 3.2 18.0 1.0
CB S:CYS62 3.2 23.3 1.0
CB S:CYS60 3.3 16.4 1.0
CB S:CYS85 3.3 18.5 1.0
CA S:CYS62 3.6 23.9 1.0
N S:CYS85 3.7 18.3 1.0
N S:CYS62 4.1 22.5 1.0
CA S:CYS85 4.1 18.8 1.0
O S:CYS60 4.4 17.8 1.0
C S:CYS60 4.4 17.9 1.0
CA S:CYS60 4.4 16.8 1.0
OG1 S:THR87 4.6 24.9 1.0
OG S:SER84 4.6 20.2 1.0
CA S:CYS82 4.6 18.2 1.0
CB S:SER84 4.7 18.6 1.0
C S:SER84 4.7 18.4 1.0
O S:HOH3514 4.8 37.1 1.0
C S:ILE61 4.9 21.2 1.0
C S:CYS85 4.9 19.6 1.0
CB S:ILE70 5.0 16.2 1.0
C S:CYS62 5.0 25.6 1.0

Reference:

M.Suga, N.Yano, K.Muramoto, K.Shinzawa-Itoh, T.Maeda, E.Yamashita, T.Tsukihara, S.Yoshikawa. Distinguishing Between Cl- and O2(2-) As the Bridging Element Between FE3+ and CU2+ in Resting-Oxidized Cytochrome C Oxidase Acta Crystallogr.,Sect.D V. 67 742 2011.
ISSN: ISSN 0907-4449
PubMed: 21795816
DOI: 10.1107/S0907444911022803
Page generated: Thu Oct 24 11:15:32 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy