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Zinc in PDB 3ada: Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite

Enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite

All present enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite:
1.5.3.1;

Protein crystallography data

The structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite, PDB code: 3ada was solved by H.Suzuki, T.Moriguchi, K.Ida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.98 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 198.797, 198.797, 197.077, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 23.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite (pdb code 3ada). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite, PDB code: 3ada:

Zinc binding site 1 out of 1 in 3ada

Go back to Zinc Binding Sites List in 3ada
Zinc binding site 1 out of 1 in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Sulfite within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn100

b:32.4
occ:1.00
 SG D:CYS63 1.5 31.8 1.0
SG D:CYS9 1.8 39.9 1.0
ND1 D:HIS59 2.1 32.0 1.0
SG D:CYS6 2.1 36.1 1.0
CB D:CYS9 2.8 22.4 1.0
CB D:CYS6 3.0 26.8 1.0
CG D:HIS59 3.0 30.1 1.0
CE1 D:HIS59 3.1 30.7 1.0
CB D:CYS63 3.2 30.7 1.0
CB D:HIS59 3.3 29.4 1.0
N D:CYS63 3.5 43.2 1.0
N D:CYS9 3.8 20.9 1.0
CA D:CYS63 3.9 40.4 1.0
CA D:CYS9 3.9 27.3 1.0
CD2 D:HIS59 4.2 33.1 1.0
NE2 D:HIS59 4.2 23.9 1.0
CB D:ASN8 4.3 33.3 1.0
C D:GLY62 4.6 49.0 1.0
CA D:CYS6 4.6 30.0 1.0
C D:ASN8 4.6 34.0 1.0
CA D:GLY62 4.7 35.3 1.0
CA D:ASN8 4.8 31.9 1.0
CA D:HIS59 4.8 26.3 1.0
N D:ASN8 4.8 31.7 1.0
ND2 D:ASN8 4.8 34.4 1.0
O C:HOH234 4.9 23.7 1.0
C D:CYS63 4.9 31.3 1.0

Reference:

T.Moriguchi, K.Ida, T.Hikima, G.Ueno, M.Yamamoto, H.Suzuki. Channeling and Conformational Changes in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96. J.Biochem. V. 148 491 2010.
ISSN: ISSN 0021-924X
PubMed: 20675294
DOI: 10.1093/JB/MVQ083
Page generated: Wed Aug 20 07:45:01 2025

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